YRC Public Data Repository - Protein Structure Prediction

Protein:	ALLA_AGRFC
Organism:	Agrobacterium tumefaciens str. C58
Length:	166 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ALLA_AGRFC.

Description	E-value	Query Range	Subject Range
gi\|84362093 - gi\|84362093\|ref\|ZP_00986729.1\| COG3194: Ureidoglycolate hydrolase [Burkholderia dolosa AUO158]	250.0	[0..5]	[166..4]
gi\|84354974 - gi\|84354974\|ref\|ZP_00979867.1\| COG3194: Ureidoglycolate hydrolase [Burkholderia cenocepacia PC184] gi\|206560400, gi... - gi\|206560400\|ref\|YP_002231164.1\| ureidoglycolate hydrolase [Burkholderia cenocepacia J2315], gi\|1980...	249.0	[0..5]	[166..4]
gi\|74019843, gi\|... - gi\|74019843\|ref\|ZP_00690455.1\| Ureidoglycolate hydrolase [Burkholderia ambifaria AMMD], gi\|72607488\|...	249.0	[0..5]	[166..4]
gi\|77967489, gi\|... - gi\|78066744\|ref\|YP_369513.1\| ureidoglycolate hydrolase [Burkholderia sp. 383], gi\|77967489\|gb\|ABB088...	249.0	[0..5]	[166..4]
gi\|67658745, gi\|... - gi\|67658745\|ref\|ZP_00456114.1\| Ureidoglycolate hydrolase [Burkholderia cenocepacia AU 1054], gi\|6709... gi\|67666199, gi\|... - gi\|67666199\|ref\|ZP_00463451.1\| Ureidoglycolate hydrolase [Burkholderia cenocepacia HI2424], gi\|67100...	248.0	[0..5]	[166..4]
gi\|48788434, gi\|... - gi\|91783882\|ref\|YP_559088.1\| ureidoglycolate hydrolase [Burkholderia xenovorans LB400], gi\|91687836\|...	247.0	[0..5]	[166..4]
ALLA_PSEA7 - Ureidoglycolate lyase OS=Pseudomonas aeruginosa (strain PA7) GN=allA PE=3 SV=1	246.0	[0..5]	[164..4]
gi\|107100945 - gi\|107100945\|ref\|ZP_01364863.1\| hypothetical protein PaerPA_01001975 [Pseudomonas aeruginosa PACS2]	244.0	[0..5]	[164..4]
gi\|53719726, gi\|... - gi\|53719726\|ref\|YP_108712.1\| ureidoglycolate hydrolase [Burkholderia pseudomallei K96243], gi\|522101... gi\|134251408, gi... - gi\|134277758\|ref\|ZP_01764473.1\| ureidoglycolate hydrolase [Burkholderia pseudomallei 305], gi\|134251... ALLA_BURMA - Ureidoglycolate lyase OS=Burkholderia mallei (strain ATCC 23344) GN=allA PE=3 SV=1 gi\|217421512, gi... - gi\|217421512\|ref\|ZP_03453016.1\| ureidoglycolate hydrolase [Burkholderia pseudomallei 576], gi\|217395... gi\|167919460 - gi\|167919460\|ref\|ZP_02506551.1\| ureidoglycolate hydrolase [Burkholderia pseudomallei BCC215] gi\|194314153, gi... - gi\|254178490\|ref\|ZP_04885145.1\| ureidoglycolate hydrolase [Burkholderia mallei ATCC 10399], gi\|19431... gi\|237812744, gi... - gi\|237812744\|ref\|YP_002897195.1\| ureidoglycolate lyase [Burkholderia pseudomallei MSHR346], gi\|23750... gi\|225927781, gi... - gi\|226200097\|ref\|ZP_03795643.1\| ureidoglycolate lyase [Burkholderia pseudomallei Pakistan 9], gi\|225... gi\|254358153, gi... - gi\|87317251\|ref\|ZP_01098261.1\| COG3194: Ureidoglycolate hydrolase [Burkholderia mallei 2002721280], ... gi\|76809310, gi\|... - gi\|76809310\|ref\|YP_333922.1\| ureidoglycolate hydrolase [Burkholderia pseudomallei 1710b], gi\|7657876... ALLA_BURMA - Ureidoglycolate hydrolase OS=Burkholderia mallei GN=allA PE=3 SV=1 gi\|90293890, gi\|... - gi\|90293890\|ref\|ZP_01213488.1\| hypothetical protein Bpse17_02001470 [Burkholderia pseudomallei 1710a... gi\|167816325 - gi\|167816325\|ref\|ZP_02448005.1\| ureidoglycolate hydrolase [Burkholderia pseudomallei 91] gi\|67738103, gi\|... - gi\|67738103\|ref\|ZP_00488801.1\| COG3194: Ureidoglycolate hydrolase [Burkholderia pseudomallei 668], g... gi\|167824704 - gi\|167824704\|ref\|ZP_02456175.1\| ureidoglycolate hydrolase [Burkholderia pseudomallei 9] ALLA_BURM7 - Ureidoglycolate lyase OS=Burkholderia mallei (strain NCTC 10247) GN=allA PE=3 SV=1 gi\|243063532, gi... - gi\|243063532\|gb\|EES45718.1\| ureidoglycolate lyase [Burkholderia mallei PRL-20], gi\|167000606\|ref\|ZP_... gi\|99913152, gi\|... - gi\|99913152\|ref\|ZP_01319810.1\| hypothetical protein Bpse1_03000709 [Burkholderia pseudomallei 1655],... ALLA_BURM9 - Ureidoglycolate lyase OS=Burkholderia mallei (strain NCTC 10229) GN=allA PE=3 SV=1 gi\|167739111 - gi\|167739111\|ref\|ZP_02411885.1\| ureidoglycolate hydrolase [Burkholderia pseudomallei 14] gi\|194515360, gi... - gi\|67763129\|ref\|ZP_00501826.1\| COG3194: Ureidoglycolate hydrolase [Burkholderia pseudomallei S13], g... gi\|167903210 - gi\|167903210\|ref\|ZP_02490415.1\| ureidoglycolate hydrolase [Burkholderia pseudomallei NCTC 13177] gi\|85067414 - gi\|85067414\|ref\|ZP_01028267.1\| COG3194: Ureidoglycolate hydrolase [Burkholderia mallei 10229] gi\|167911448 - gi\|167911448\|ref\|ZP_02498539.1\| ureidoglycolate hydrolase [Burkholderia pseudomallei 112] ALLA_BURMS - Ureidoglycolate lyase OS=Burkholderia mallei (strain SAVP1) GN=allA PE=3 SV=1 gi\|167846233 - gi\|167846233\|ref\|ZP_02471741.1\| ureidoglycolate hydrolase [Burkholderia pseudomallei B7210] gi\|67753249, gi\|... - gi\|67753249\|ref\|ZP_00492191.1\| COG3194: Ureidoglycolate hydrolase [Burkholderia pseudomallei Pasteur... gi\|167894819 - gi\|167894819\|ref\|ZP_02482221.1\| ureidoglycolate hydrolase [Burkholderia pseudomallei 7894] gi\|161355274, gi... - gi\|82534783\|ref\|ZP_00893811.1\| hypothetical protein Bpse110_02003981 [Burkholderia pseudomallei 1106... gi\|194525688, gi... - gi\|83619470\|ref\|ZP_00929904.1\| COG3194: Ureidoglycolate hydrolase [Burkholderia mallei FMH], gi\|2542... gi\|82532328, gi\|... - gi\|82532328\|ref\|ZP_00891540.1\| COG3194: Ureidoglycolate hydrolase [Burkholderia pseudomallei 1106a],... gi\|67638905, gi\|... - gi\|67638905\|ref\|ZP_00437840.1\| COG3194: Ureidoglycolate hydrolase [Burkholderia mallei 10399], gi\|10... gi\|67641665, gi\|... - gi\|67641665\|ref\|ZP_00440434.1\| ureidoglycolate lyase [Burkholderia mallei GB8 horse 4], gi\|238522620... gi\|254206441, gi... - gi\|83625807\|ref\|ZP_00936036.1\| COG3194: Ureidoglycolate hydrolase [Burkholderia mallei JHU], gi\|2542... gi\|194570774, gi... - gi\|83679932\|ref\|ZP_00941641.1\| COG3194: Ureidoglycolate hydrolase [Burkholderia pseudomallei 406e], ...	244.0	[0..5]	[166..4]
ALLA_PSEAB - Ureidoglycolate lyase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=allA PE=3 SV=1 ALLA_PSEA8 - Ureidoglycolate lyase OS=Pseudomonas aeruginosa (strain LESB58) GN=allA PE=3 SV=1 ALLA_PSEAE - Ureidoglycolate lyase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228... gi\|254239863, gi... - gi\|84328428\|ref\|ZP_00976435.1\| COG3194: Ureidoglycolate hydrolase [Pseudomonas aeruginosa 2192], gi\|... gi\|126166541, gi... - gi\|84321700\|ref\|ZP_00970054.1\| COG3194: Ureidoglycolate hydrolase [Pseudomonas aeruginosa C3719], gi... ALLA_PSEAE - Ureidoglycolate hydrolase OS=Pseudomonas aeruginosa GN=allA PE=3 SV=1	244.0	[0..5]	[164..4]

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Predicted Domain #1

Region A:
Residues: [1-166]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDFLEIRPL TKEAFTPFGD VIETTPSSMR HINGGQTERH HALSAPEAAG EGARIILNIF  60
   61 RGQPRVFPHK IDMMERHPLG SQSFSPLSGR PFLVVVAQDD GGRPARPQVF LARGDQGVNY 120
  121 RRNVWHYPLM PLQAVSDFLV ADREGPGNNL EEYFFDEPFM IAEPSL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	64.09691
Match:	2bdrA
Description:	Crystal Structure of the Putative Ureidoglycolate hydrolase PP4288 from Pseudomonas putida, Northeast Structural Genomics Target PpR49
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ureidoglycolate hydrolase activity	2.68390870020187	bayes_pls_golite062009
catalytic activity	0.77242843392921	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: