YRC Public Data Repository - Protein Structure Prediction

Protein:	ALGI_PSEAE
Organism:	Pseudomonas aeruginosa
Length:	520 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ALGI_PSEAE.

Description	E-value	Query Range	Subject Range
gi\|66044308, gi\|... - gi\|66044308\|ref\|YP_234149.1\| membrane bound O-acyl transferase, MBOAT [Pseudomonas syringae pv. syri...	1.0E-89	[1..520]	[1..518]
gi\|71558191, gi\|... - gi\|71737638\|ref\|YP_273378.1\| alginate biosynthesis protein AlgI [Pseudomonas syringae pv. phaseolico...	6.0E-89	[1..520]	[1..518]
gi\|213967108, gi... - gi\|213967108\|ref\|ZP_03395257.1\| alginate biosynthesis protein AlgI [Pseudomonas syringae pv. tomato ... ALGI_PSESM - Probable poly(beta-D-mannuronate) O-acetylase OS=Pseudomonas syringae pv. tomato GN=algI PE=3 SV=1 ALGI_PSESM - Probable alginate O-acetylase AlgI OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=algI PE=3 S...	8.0E-89	[1..520]	[1..518]
gi\|126168401, gi... - gi\|254236470\|ref\|ZP_04929793.1\| alginate o-acetyltransferase AlgI [Pseudomonas aeruginosa C3719], gi... gi\|218770448, gi... - gi\|218890225\|ref\|YP_002439089.1\| alginate o-acetyltransferase AlgI [Pseudomonas aeruginosa LESB58], ... gi\|1245347 - gi\|1245347\|gb\|AAB09781.1\| AlgI	3.0E-87	[1..520]	[1..520]
gi\|70728398, gi\|... - gi\|70728398\|ref\|YP_258147.1\| alginate biosynthesis protein AlgI [Pseudomonas fluorescens Pf-5], gi\|6...	3.0E-87	[1..520]	[1..520]
gi\|116051546, gi... - gi\|116051546\|ref\|YP_789617.1\| alginate o-acetyltransferase AlgI [Pseudomonas aeruginosa UCBPP-PA14],...	5.0E-87	[1..520]	[1..520]
gi\|77457179, gi\|... - gi\|77457179\|ref\|YP_346684.1\| membrane bound O-acyl transferase, MBOAT [Pseudomonas fluorescens Pf0-1...	1.0E-86	[1..520]	[1..521]
gi\|84325862 - gi\|84325862\|ref\|ZP_00973894.1\| COG1696: Predicted membrane protein involved in D-alanine export [Pse...	6.0E-86	[20..520]	[14..514]
gi\|84319690 - gi\|84319690\|ref\|ZP_00968081.1\| COG1696: Predicted membrane protein involved in D-alanine export [Pse... gi\|107103060 - gi\|107103060\|ref\|ZP_01366978.1\| hypothetical protein PaerPA_01004129 [Pseudomonas aeruginosa PACS2]	6.0E-86	[20..520]	[14..514]
gi\|94415312 - gi\|94415312\|ref\|ZP_01295156.1\| hypothetical protein PaerP_01002865 [Pseudomonas aeruginosa PA7]	1.0E-85	[20..520]	[14..514]

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Predicted Domain #1

Region A:
Residues: [1-146]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVFSSNVFLF LFLPVFLGLY YLSGERYRNL LLLIASYVFY AWWRVDFLLL FAGVTVFNYW  60
   61 IGLRIGAAGV RTRAAQRWLI LGVVVDLCVL GYFKYANFGV DSLNEIITSF GMQPFVLTHI 120
  121 LLPIGISFYT FESISYIIDV YRGDTP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [147-223]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ATHNLIDFAA FVAIFPHLIA GPVLRFKDLV DQFNHRTHTV DKFAEGCTRF MQGFVKKVFI  60
   61 ADTLAALADH CFALQNP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [224-376]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TTGDAWLGAL AYTAQLYFDF SGYSDMAIGL GLMMGFRFME NFNQPYISQS ITEFWRRWHI  60
   61 SLSTWLRDYL YISLGGNRGS TFQTYRNLFL TMLLGGLWHG ANFTYIIWGA WHGMWLAIER 120
  121 ALGVNAAPRV LNPLKWVITF LLVVIGWVIF RAE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.979	N/A	N/A	a.7.1	Spectrin repeat
View	Download	0.962	N/A	N/A	f.17.1	F1F0 ATP synthase subunit C
View	Download	0.931	N/A	N/A	a.7.1	Spectrin repeat
View	Download	0.903	N/A	N/A	a.7.5	Tubulin chaperone cofactor A
View	Download	0.886	N/A	N/A	a.7.1	Spectrin repeat

Predicted Domain #4

Region A:
Residues: [377-520]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NLQVAWRMYE AMFSFGTWQL SELNRANLTG LQVGTLVLAY LVLAFFGLRQ FYNQPLQTKA  60
   61 PKAAANSDEV AADGPASAQP RAPREAAGDP AAIAYSPSGA LVYQPSWLSQ LPVLATRLAL 120
  121 LLLFAASVLK LSAQSYSPFL YFQF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits