YRC Public Data Repository - Protein Structure Prediction

Protein:	AKH_MANSE
Organism:	Manduca sexta
Length:	65 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AKH_MANSE.

Description	E-value	Query Range	Subject Range
gi\|81170844, gi\|... - gi\|91083865\|ref\|XP_974200.1\| PREDICTED: hypothetical protein [Tribolium castaneum], gi\|81170844\|gb\|A...	96.0	[0..1]	[64..1]
HTF_BLADI - Hypertrehalosaemic prohormone OS=Blaberus discoidalis PE=1 SV=1	86.0	[0..1]	[64..4]
gi\|55140543 - gi\|55140543\|gb\|AAV41425.1\| adipokinetic hormone preproprotein [Periplaneta americana]	84.0	[0..6]	[64..8]
gi\|158299445, gi... - gi\|158299445\|ref\|XP_001689190.1\| AGAP008834-PB [Anopheles gambiae str. PEST], gi\|157013523\|gb\|EDO633... gi\|88595938 - gi\|88595938\|gb\|ABD43194.1\| adipokinetic hormone I preproprotein [Anopheles gambiae]	82.0	[0..5]	[64..8]
gi\|157131132, gi... - gi\|157131132\|ref\|XP_001655817.1\| hypothetical protein AaeL_AAEL011996 [Aedes aegypti], gi\|108871660\|...	81.0	[0..1]	[64..3]
Akh-PA - The gene Adipokinetic hormone is referred to in FlyBase by the symbol Dmel\Akh (CG1171, FBgn0004552)...	77.0	[0..2]	[63..5]
gi\|448528, gi\|74... - gi\|7428579\|pir\|\|AKLQS2 adipokinetic hormone II precursor - desert locust, gi\|448528\|prf\|\|1917247B ad...	75.0	[0..4]	[63..7]
AKH2_SCHNI - Adipokinetic prohormone type 2 OS=Schistocerca nitens PE=1 SV=1	72.0	[0..4]	[63..7]
gi\|54641782\|gb\|E... - GA11153-PA [Drosophila pseudoobscura], GA11153 [Drosophila pseudoobscura pseudoobscura] gi\|195172289, gi... - gi\|195172289\|ref\|XP_002026931.1\| GL12828 [Drosophila persimilis], gi\|194112699\|gb\|EDW34742.1\| GL1282... gi\|54641782, gi\|... - gi\|54641782\|gb\|EAL30532.1\| GA11153 [Drosophila pseudoobscura pseudoobscura], gi\|125977996\|ref\|XP_001...	71.0	[0..4]	[63..8]

Back

Predicted Domain #1

Region A:
Residues: [1-65]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYKLTVFLMF IAFVIIAEAQ LTFTSSWGGK RAMTNSISCR NDEAIAAIYK AIQNEAERFI  60
   61 MCQKN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.709	a.237.1	Description not found.
View	Download	0.570	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.570	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.563	a.4.1	Homeodomain-like
View	Download	0.563	a.4.1	Homeodomain-like
View	Download	0.562	a.4.1	Homeodomain-like
View	Download	0.549	a.4.1	Homeodomain-like
View	Download	0.502	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.457	a.179.1	Replisome organizer (g39p helicase loader/inhibitor protein)

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits