YRC Public Data Repository - Protein Structure Prediction

Protein:	AHSP_BOVIN
Organism:	Bos taurus
Length:	92 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AHSP_BOVIN.

Description	E-value	Query Range	Subject Range
gi\|109128359 - gi\|109128359\|ref\|XP_001113388.1\| PREDICTED: erythroid associated factor [Macaca mulatta]	174.0	[0..1]	[91..1]
gi\|19110287 - gi\|19110287\|gb\|AAL82894.1\| EDRF [Homo sapiens]	172.0	[0..1]	[91..1]
AHSP_MOUSE - Alpha-hemoglobin-stabilizing protein OS=Mus musculus GN=Ahsp PE=1 SV=1	170.0	[0..1]	[91..1]
gi\|163916628, gi... - gi\|27680026\|ref\|XP_215059.1\| PREDICTED: similar to erythroid associated factor [Rattus norvegicus], ...	167.0	[0..1]	[91..1]
gi\|13492054 - gi\|13492054\|gb\|AAK28063.1\|AF317803_1 erythroid association factor [Bos taurus]	104.0	[0..34]	[89..1]

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Predicted Domain #1

Region A:
Residues: [1-92]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALIQTNKDL ISKGIKEFNI LLNQQVFSDP AISEEAMVTV VNDWVSFYIN YYKKQLSGEQ  60
   61 DEQDKALQEF RQELNTLSAS FLDKYRNFLK SS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.69897
Match:	1y01A
Description:	Crystal structure of AHSP bound to Fe(II) alpha-hemoglobin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits