YRC Public Data Repository - Protein Structure Prediction

Protein:	AGRP_BOVIN
Organism:	Bos taurus
Length:	134 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AGRP_BOVIN.

Description	E-value	Query Range	Subject Range
AGRP_PIG - Agouti-related protein OS=Sus scrofa GN=AGRP PE=3 SV=2	190.0	[0..1]	[134..1]
AGRP_MOUSE - Agouti-related protein OS=Mus musculus GN=Agrp PE=1 SV=1	161.0	[0..1]	[134..1]
AGRP - agouti related protein homolog (mouse) gi\|114663139 - gi\|114663139\|ref\|XP_001164015.1\| PREDICTED: similar to Agouti related protein [Pan troglodytes]	161.0	[0..1]	[134..1]
gi\|73957497 - gi\|73957497\|ref\|XP_853932.1\| PREDICTED: similar to Agouti-related protein precursor [Canis familiari...	158.0	[0..16]	[134..16]
gi\|109128902 - gi\|109128902\|ref\|XP_001091740.1\| PREDICTED: similar to Agouti-related protein precursor [Macaca mula...	156.0	[0..18]	[134..18]
gi\|48256953 - gi\|48256953\|gb\|AAT41659.1\| agouti-related peptide [Ovis aries]	148.0	[0..24]	[128..1]
gi\|62665164, gi\|... - gi\|62665164\|ref\|XP_574228.1\| PREDICTED: similar to Agouti-related protein precursor [Rattus norvegic...	148.0	[0..1]	[133..1]
gi\|36788207 - gi\|36788207\|emb\|CAD88211.1\| agouti-related protein precursor [Carassius auratus]	130.0	[0..23]	[127..18]

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Predicted Domain #1

Region A:
Residues: [1-134]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTAVLLSCA LLLAMPPLQG AQMGPAPLEG IGRPEEALFL ELQGLSLQPS LKRITEEQAE  60
   61 ESLLQEAEAK ALAEVLDPEG RKPRSPRRCV RLHESCLGHQ VPCCDPCATC YCRFFNAFCY 120
  121 CRKLGTTTNP CSRT

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	79.537602
Match:	PF05039.3
Description:	No description for PF05039.3 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.267	N/A	N/A	a.216.1	Description not found.
View	Download	0.216	N/A	N/A	a.29.15	Description not found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits