YRC Public Data Repository - Protein Structure Prediction

Protein:	AGAA_ECOLI
Organism:	Escherichia coli
Length:	167 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AGAA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|25493463 - pir\|\|E83702 N-acetylglucosamine-6-phosphate deacetylase nagA [imported] - Bacillus halodurans (strai... gi\|15612984, gi\|... - gi\|15612984\|ref\|NP_241287.1\| N-acetylglucosamine-6-phosphate deacetylase [Bacillus halodurans C-125]...	162.0	[0..2]	[165..222]
gi\|20806755 - gi\|20806755\|ref\|NP_621926.1\| N-acetylglucosamine-6-phosphate deacetylase [Thermoanaerobacter tengcon... gi\|223490117, gi... - gi\|254478128\|ref\|ZP_05091511.1\| N-acetylglucosamine-6-phosphate deacetylase [Carboxydibrachium pacif... gi\|20806755, gi\|... - gi\|20806755\|ref\|NP_621926.1\| N-acetylglucosamine-6-phosphate deacetylase [Thermoanaerobacter tengcon...	160.0	[0..1]	[165..222]
gi\|90441575, gi\|... - gi\|90578489\|ref\|ZP_01234300.1\| N-acetylglucosamine-6-phosphate deacetylase [Vibrio angustum S14], gi...	160.0	[0..1]	[165..224]
gi\|27358978, gi\|... - gi\|27367409\|ref\|NP_762936.1\| N-acetylglucosamine-6-phosphate deacetylase [Vibrio vulnificus CMCP6], ...	159.0	[0..1]	[165..219]
gi\|85837703, gi\|... - gi\|86144804\|ref\|ZP_01063136.1\| N-acetylglucosamine-6-phosphate deacetylase [Vibrio sp. MED222], gi\|8...	158.0	[0..1]	[165..224]
gi\|37677170, gi\|... - gi\|37677170\|ref\|NP_937566.1\| N-acetylglucosamine-6-phosphate deacetylase [Vibrio vulnificus YJ016], ...	158.0	[0..1]	[165..219]
gi\|255308483 - gi\|255308483\|ref\|ZP_05352654.1\| N-acetylglucosamine-6-phosphate deacetylase [Clostridium difficile A... gi\|126701076, gi... - gi\|126701076\|ref\|YP_001089973.1\| N-acetylglucosamine-6-phosphate deacetylase [Clostridium difficile ...	157.0	[0..1]	[162..214]
gi\|254226225, gi... - gi\|254226225\|ref\|ZP_04919819.1\| N-acetylglucosamine-6-phosphate deacetylase [Vibrio cholerae V51], g...	157.0	[0..2]	[163..182]
gi\|229518044, gi... - gi\|229518044\|ref\|ZP_04407488.1\| N-acetylglucosamine-6-phosphate deacetylase [Vibrio cholerae RC9], g... NAGA_VIBCH - N-acetylglucosamine-6-phosphate deacetylase OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El T... gi\|229608426, gi... - gi\|229608426\|ref\|YP_002879074.1\| N-acetylglucosamine-6-phosphate deacetylase [Vibrio cholerae MJ-123... gi\|121548417, gi... - gi\|121587334\|ref\|ZP_01677105.1\| N-acetylglucosamine-6-phosphate deacetylase [Vibrio cholerae 2740-80... gi\|124114488, gi... - gi\|153216038\|ref\|ZP_01950243.1\| N-acetylglucosamine-6-phosphate deacetylase [Vibrio cholerae 1587], ... gi\|153222754, gi... - gi\|153222754\|ref\|ZP_01953413.1\| N-acetylglucosamine-6-phosphate deacetylase [Vibrio cholerae MAK 757... gi\|254843830, gi... - gi\|75829806\|ref\|ZP_00759098.1\| COG1820: N-acetylglucosamine-6-phosphate deacetylase [Vibrio cholerae... gi\|153818603, gi... - gi\|153818603\|ref\|ZP_01971270.1\| N-acetylglucosamine-6-phosphate deacetylase [Vibrio cholerae NCTC 84... gi\|146316000, gi... - gi\|75826303\|ref\|ZP_00755738.1\| COG1820: N-acetylglucosamine-6-phosphate deacetylase [Vibrio cholerae... gi\|153822689, gi... - gi\|229510923\|ref\|ZP_04400402.1\| N-acetylglucosamine-6-phosphate deacetylase [Vibrio cholerae B33], g... gi\|75816355, gi\|... - gi\|75816355\|ref\|ZP_00746828.1\| COG1820: N-acetylglucosamine-6-phosphate deacetylase [Vibrio cholerae... gi\|148874622, gi... - gi\|153829879\|ref\|ZP_01982546.1\| N-acetylglucosamine-6-phosphate deacetylase [Vibrio cholerae 623-39]... NAGA_VIBCH - N-acetylglucosamine-6-phosphate deacetylase OS=Vibrio cholerae GN=nagA PE=1 SV=2 gi\|227009056, gi... - gi\|227081168\|ref\|YP_002809719.1\| N-acetylglucosamine-6-phosphate deacetylase [Vibrio cholerae M66-2]... gi\|229505407, gi... - gi\|229505407\|ref\|ZP_04394917.1\| N-acetylglucosamine-6-phosphate deacetylase [Vibrio cholerae BX 3302...	156.0	[0..2]	[163..213]
gi\|254291868, gi... - gi\|254291868\|ref\|ZP_04962651.1\| N-acetylglucosamine-6-phosphate deacetylase [Vibrio cholerae AM-1922... gi\|149740051, gi... - gi\|153826191\|ref\|ZP_01978858.1\| N-acetylglucosamine-6-phosphate deacetylase [Vibrio cholerae MZO-2],... gi\|183179420, gi... - gi\|183179420\|ref\|ZP_02957631.1\| N-acetylglucosamine-6-phosphate deacetylase [Vibrio cholerae MZO-3],... gi\|229333686, gi... - gi\|229529912\|ref\|ZP_04419302.1\| N-acetylglucosamine-6-phosphate deacetylase [Vibrio cholerae 12129(1... gi\|229350525, gi... - gi\|229512444\|ref\|ZP_04401917.1\| N-acetylglucosamine-6-phosphate deacetylase [Vibrio cholerae TMA 21]... gi\|2541901 - gi\|2541901\|dbj\|BAA22834.1\| N-acetylglucosamine 6-phosphate deacetylase [Vibrio cholerae non-O1] gi\|7467512 - pir\|\|JC5649 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) - Vibrio cholerae (strain non-...	156.0	[0..2]	[163..213]

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Predicted Domain #1

Region A:
Residues: [1-167]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHCYNGMTGL HHREPGMVGA GLTDKRAWLE LIADGHHVHP AAMSLCCCCA KERIVLITDA  60
   61 MQAAGMPDGR YTLCGEEVQM HGGVVRTASG GLAGSTLSVD AAVRNMVELT GVTPAEAIHM 120
  121 ASLHPARMLG VDGVLGSLKP GKRASVVALD SGLHVQQIWI QGQLASF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.69897
Match:	1ymyA
Description:	Crystal Structure of the N-Acetylglucosamine-6-phosphate deacetylase from Escherichia coli K12
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.17193424385494	bayes_pls_golite062009
hydrolase activity	0.94352628241918	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: