YRC Public Data Repository - Protein Structure Prediction

Protein:	DEF4_RAPSA
Organism:	Raphanus sativus
Length:	80 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DEF4_RAPSA.

Description	E-value	Query Range	Subject Range
AFP1_BRANA - (P30225) Cysteine-rich antifungal protein 1 precursor (AFP1) DEF1_RAPSA - Defensin-like protein 1 OS=Raphanus sativus GN=AFP1 PE=1 SV=1	104.0	[0..1]	[80..1]
gi\|62823009 - gi\|62823009\|gb\|AAY15221.1\| antifungal protein [Sinapis alba]	103.0	[0..1]	[80..1]
gi\|11691894 - gi\|11691894\|dbj\|BAB19054.1\| gamma-thionin1 [Wasabia japonica]	102.0	[0..1]	[80..1]
DEF14_ARATH - Defensin-like protein 14 OS=Arabidopsis thaliana GN=PDF1.3 PE=2 SV=1	102.0	[0..1]	[80..1]
gi\|23321205 - gi\|23321205\|gb\|AAN23105.1\| defensin [Brassica rapa subsp. pekinensis]	102.0	[0..1]	[80..1]
gi\|63029683 - gi\|63029683\|gb\|AAY27737.1\| putative plant defensin PDF1.2 [Arabidopsis halleri]	102.0	[0..1]	[80..1]

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Predicted Domain #1

Region A:
Residues: [1-80]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKFVSIITL LFVALVLFAA FEAPTMVEAQ KLCERSSGTW SGVCGNNNAC KNQCINLEGA  60
   61 RHGSCNYIFP YHRCICYFPC

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.56
Match:	1ayjA
Description:	DETERMINATION OF THE THREE-DIMENSIONAL SOLUTION STRUCTURE OF RAPHANUS SATIVUS ANTIFUNGAL PROTEIN 1 (RS-AFP1) BY 1H NMR, 20 STRUCTURES
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits