YRC Public Data Repository - Protein Structure Prediction

Protein:	ADM2_RAT
Organism:	Rattus norvegicus
Length:	146 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ADM2_RAT.

Description	E-value	Query Range	Subject Range
ADM2_MOUSE - ADM2 OS=Mus musculus GN=Adm2 PE=2 SV=1	180.0	[0..1]	[146..1]
gi\|109094686 - gi\|109094686\|ref\|XP_001116328.1\| PREDICTED: similar to adrenomedullin 2 precusor [Macaca mulatta]	167.0	[0..3]	[146..1]
gi\|114687068, gi... - gi\|114687070\|ref\|XP_001141730.1\| PREDICTED: adrenomedullin 2 precusor isoform 2 [Pan troglodytes], g...	161.0	[0..3]	[146..1]
HGNC:28898\|MIM:6... - 2 ADM2 - adrenomedullin 2 gi\|148921710, gi... - gi\|208965806\|dbj\|BAG72917.1\| adrenomedullin 2 [synthetic construct], gi\|148921710\|gb\|AAI46570.1\| Adr...	160.0	[0..3]	[146..1]
gi\|76617329 - gi\|76617329\|ref\|XP_876306.1\| PREDICTED: similar to adrenomedullin 2 [Bos taurus]	159.0	[0..3]	[146..1]
gi\|68358772 - gi\|68358772\|ref\|XP_695684.1\| PREDICTED: similar to intermedin precursor [Danio rerio]	128.0	[0..38]	[146..45]
gi\|73968835 - gi\|73968835\|ref\|XP_848492.1\| PREDICTED: similar to adrenomedullin 2 precusor [Canis familiaris]	121.0	[0..2]	[146..118]

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Predicted Domain #1

Region A:
Residues: [1-146]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQLLMVTVT FGCISLLYLL PGTLSGSLGK GLRPREPPAK IPSSGPQPGH PSLRPVVWKP  60
   61 PHALQPQGRG NPALATVHLP QGGGSRHPGP QRHVGSRRPH AQLLRVGCVL GTCQVQNLSH 120
  121 RLWQLVRPSG RRDSAPVDPS SPHSYG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits