YRC Public Data Repository - Protein Structure Prediction

Protein:	ACYM_CHICK, ACYP...
Organism:	Gallus gallus
Length:	102 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ACYM_CHICK, ACYP....

Description	E-value	Query Range	Subject Range
gi\|109501088, gi... - gi\|149044859\|gb\|EDL98045.1\| rCG23240 [Rattus norvegicus], gi\|109501088\|ref\|XP_001059111.1\| PREDICTED...	132.0	[0..2]	[102..24]
ACYP2_MOUSE - Acylphosphatase-2 OS=Mus musculus GN=Acyp2 PE=1 SV=2	127.0	[0..3]	[102..7]
gi\|90079091 - gi\|90079091\|dbj\|BAE89225.1\| unnamed protein product [Macaca fascicularis] gi\|109102938 - gi\|109102938\|ref\|XP_001114543.1\| PREDICTED: similar to muscle-type acylphosphatase 2 [Macaca mulatta...	126.0	[0..1]	[102..26]
gi\|86438028 - gi\|86438028\|gb\|AAI12759.1\| ACYP2 protein [Bos taurus]	124.0	[0..1]	[102..21]
gi\|73970158 - gi\|73970158\|ref\|XP_531824.2\| PREDICTED: similar to muscle-type acylphosphatase 2 [Canis familiaris]	124.0	[0..1]	[102..27]
ACYP2_RABIT - Acylphosphatase-2 OS=Oryctolagus cuniculus GN=ACYP2 PE=1 SV=2	123.0	[0..4]	[102..1]
ACYP2_PIG - Acylphosphatase-2 OS=Sus scrofa GN=ACYP2 PE=1 SV=2	123.0	[0..4]	[102..1]

Back

Predicted Domain #1

Region A:
Residues: [1-102]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SALTKASGSL KSVDYEVFGR VQGVCFRMYT EEEARKLGVV GWVKNTSQGT VTGQVQGPED  60
   61 KVNAMKSWLS KVGSPSSRID RTKFSNEKEI SKLDFSGFST RY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.154902
Match:	1apsA
Description:	THREE-DIMENSIONAL STRUCTURE OF ACYLPHOSPHATASE. REFINEMENT AND STRUCTURE ANALYSIS
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits