YRC Public Data Repository - Protein Structure Prediction

Protein:	SO2743
Organism:	Shewanella oneidensis
Length:	650 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SO2743.

Description	E-value	Query Range	Subject Range
ACSA_SHESM - Acetyl-coenzyme A synthetase OS=Shewanella sp. (strain MR-4) GN=acsA PE=3 SV=1	617.0	[0..1]	[650..1]
ACSA_SHESR - Acetyl-coenzyme A synthetase OS=Shewanella sp. (strain MR-7) GN=acsA PE=3 SV=1	617.0	[0..1]	[650..1]
ACSA_XANP2 - Acetyl-coenzyme A synthetase OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=acsA PE=3...	617.0	[0..3]	[647..2]
ACSA_SHESA - Acetyl-coenzyme A synthetase OS=Shewanella sp. (strain ANA-3) GN=acsA PE=3 SV=1	616.0	[0..1]	[650..1]
ACSA_SHEAM - Acetyl-coenzyme A synthetase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=acsA PE=3 SV...	614.0	[0..1]	[648..1]
ACSA_SHEB8 - Acetyl-coenzyme A synthetase OS=Shewanella baltica (strain OS185) GN=acsA PE=3 SV=1 ACSA_SHEB5 - Acetyl-coenzyme A synthetase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=acsA PE=3 SV=1	614.0	[0..1]	[650..1]
ACSA_SHESW - Acetyl-coenzyme A synthetase OS=Shewanella sp. (strain W3-18-1) GN=acsA PE=3 SV=1	613.0	[0..1]	[650..1]
ACSA_SHEPC - Acetyl-coenzyme A synthetase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=acsA PE=3 S...	613.0	[0..1]	[650..1]
ACSA_SHEB9 - Acetyl-coenzyme A synthetase OS=Shewanella baltica (strain OS195) GN=acsA PE=3 SV=1	612.0	[0..1]	[650..1]
gi\|56461107, gi\|... - gi\|56461107\|ref\|YP_156388.1\| AMP-(fatty) acid ligase [Idiomarina loihiensis L2TR], gi\|56180117\|gb\|AA...	610.0	[0..4]	[647..2]

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Predicted Domain #1

Region A:
Residues: [1-650]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSQSLYKVS GNIAANALVN NDQYKTMYQE SIVNPEGFWR EHGKRIDWIK PYTKIKKTTF  60
   61 DDHNLSINWF YDGTLNASAN CLDRHLAAHS DRVAIIWEGD NANEQRKITY GELHTQVCKF 120
  121 ANALRSQGVR RGDIVTIYMP MVPEAAVAML ACARIGAVHS VVFGGFSPDS IASRVIDGKS 180
  181 KIVITSDEGM RGGRAIPLKR NIDDALKHPD VTSVEKVIVL KRTGGKIDWV EGRDVWWHSL 240
  241 VETASEHCAV EEMGAEDPLF LLYTSGSTGN PKGVLHTTGG YMVYASMTHE YVFDYKPGEI 300
  301 YWCTADVGWI TGHSYMVYGP LANGATVLIH EGVPNHPSPA RLGEMIDRHK VNILYTAPTL 360
  361 IRALMAEGKQ HFDKYNGSSL RIMGSVGEPI NPEAWRWYHE VIGHEHCPIV DTWWQTETGG 420
  421 ILITPLPGAT DTKPGSATRP FFGVQPALVD NMGNILEGAT EGNLVLLDSW PGQMRTVYGD 480
  481 HERFVLTYFK TFRGMYFTGD GARRDEDGYY WITGRVDDVI NVSGHRLGTA EVESALVSHE 540
  541 LVAEAAVVGY PHDIKGQGIY AYVTLTRGTE ESEELRQELR QWVRKEIGAL ATPDLIQWAT 600
  601 GLPKTRSGKI MRRFLRKIAA NEVTNLGDAS TLADPAVIET LIETRLNRNE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	173.0
Match:	2p2bA
Description:	No description for 2p2bA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits