YRC Public Data Repository - Protein Structure Prediction

Protein:	ACPS_LACLA
Organism:	Lactococcus lactis subsp. lactis
Length:	119 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ACPS_LACLA.

Description	E-value	Query Range	Subject Range
ACPS_LACLM - Holo-[acyl-carrier-protein] synthase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=acpS P... ACPS_LACLS - Holo-[acyl-carrier-protein] synthase OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=acpS PE=...	148.0	[0..1]	[119..1]
gi\|221086403, gi... - gi\|221086403\|ref\|ZP_03555945.1\| holo-acyl-carrier-protein synthase [Geobacillus sp. Y412MC61], gi\|22... ACPS_GEOKA - Holo-[acyl-carrier-protein] synthase OS=Geobacillus kaustophilus (strain HTA426) GN=acpS PE=3 SV=1 gi\|229499573, gi... - gi\|229499573\|ref\|ZP_04393256.1\| holo-acyl-carrier-protein synthase [Geobacillus sp. Y412MC52], gi\|22... ACPS_GEOKA - Holo-[acyl-carrier-protein] synthase OS=Geobacillus kaustophilus GN=acpS PE=3 SV=1	147.0	[0..1]	[118..1]
ACPS_STRTD - Holo-[acyl-carrier-protein] synthase OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=...	146.0	[0..1]	[119..1]
ACPS_STRA5 - Holo-[acyl-carrier-protein] synthase OS=Streptococcus agalactiae serotype V GN=acpS PE=3 SV=1 ACPS_STRA1 - Holo-[acyl-carrier-protein] synthase OS=Streptococcus agalactiae serotype Ia GN=acpS PE=3 SV=1 ACPS_STRA3 - Holo-[acyl-carrier-protein] synthase OS=Streptococcus agalactiae serotype III GN=acpS PE=3 SV=1 ACPS_STRA1 - Holo-[acyl-carrier-protein] synthase OS=Streptococcus agalactiae serotype Ia (strain ATCC 27591 / A9... gi\|77414521, gi\|... - gi\|77414521\|ref\|ZP_00790667.1\| holo-(acyl-carrier-protein) synthase [Streptococcus agalactiae 515], ... gi\|77161538, gi\|... - gi\|77412403\|ref\|ZP_00788711.1\| holo-(acyl-carrier-protein) synthase [Streptococcus agalactiae CJB111... gi\|77172390, gi\|... - gi\|77409006\|ref\|ZP_00785726.1\| holo-(acyl-carrier-protein) synthase [Streptococcus agalactiae COH1],... ACPS_STRA3 - Holo-[acyl-carrier-protein] synthase OS=Streptococcus agalactiae serotype III (strain NEM316) GN=acp... gi\|77406431, gi\|... - gi\|77406431\|ref\|ZP_00783489.1\| holo-(acyl-carrier-protein) synthase [Streptococcus agalactiae H36B],... ACPS_STRA5 - Holo-[acyl-carrier-protein] synthase OS=Streptococcus agalactiae serotype V (strain ATCC BAA-611 / 2...	145.0	[0..1]	[118..1]
ACPS_STAEQ - Holo-[acyl-carrier-protein] synthase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=ac... ACPS_STAEP - (Q8CNK6) Holo-[acyl-carrier-protein] synthase (EC 2.7.8.7) (Holo-ACP synthase) (4'-phosphopantethein... ACPS_STAES - Holo-[acyl-carrier-protein] synthase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=acpS PE=3 ...	145.0	[0..1]	[119..1]
ACPS_STRT1 - Holo-[acyl-carrier-protein] synthase OS=Streptococcus thermophilus (strain CNRZ 1066) GN=acpS PE=3 S... ACPS_STRT2 - Holo-[acyl-carrier-protein] synthase OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311)... gi\|55737684, gi\|... - gb\|AAV63246.1\| holo-(acyl carrier protein) synthase [Streptococcus thermophilus CNRZ1066], gb\|AAV61...	144.0	[0..1]	[118..1]
ACPS_STAAU - (Q9ZAH6) Holo-[acyl-carrier-protein] synthase (EC 2.7.8.7) (Holo-ACP synthase) (4'-phosphopantethein... gi\|221141593 - gi\|221141593\|ref\|ZP_03566086.1\| 4'-phosphopantetheinyl transferase [Staphylococcus aureus subsp. aur... gi\|221137313 - gi\|221137313\|ref\|ZP_03562122.1\| 4'-phosphopantetheinyl transferase [Staphylococcus aureus subsp. aur... ACPS_STAAC - Holo-[acyl-carrier-protein] synthase OS=Staphylococcus aureus (strain COL) GN=acpS PE=1 SV=1 ACPS_STAAT - Holo-[acyl-carrier-protein] synthase OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=acpS PE=3... gi\|87126430\|gb\|A... - holo-(acyl-carrier-protein) synthase [Staphylococcus aureus subsp. aureus USA300], holo-(acyl-carrie... gi\|253731092, gi... - gi\|253731092\|ref\|ZP_04865257.1\| holo-(acyl-carrier-protein) synthase [Staphylococcus aureus subsp. a... ACPS_STAAE - Holo-[acyl-carrier-protein] synthase OS=Staphylococcus aureus (strain Newman) GN=acpS PE=3 SV=1 ACPS_STAA3 - Holo-[acyl-carrier-protein] synthase OS=Staphylococcus aureus (strain USA300) GN=acpS PE=3 SV=1 ACPS_STAA8 - Holo-[acyl-carrier-protein] synthase OS=Staphylococcus aureus (strain NCTC 8325) GN=acpS PE=3 SV=1	143.0	[0..1]	[119..1]
gi\|269203706\|ref... - 4'-phosphopantetheinyl transferase [Staphylococcus aureus subsp. aureus ED98] ACPS_STAAW - Holo-[acyl-carrier-protein] synthase OS=Staphylococcus aureus (strain MW2) GN=acpS PE=3 SV=1 ACPS_STAAN - Holo-[acyl-carrier-protein] synthase OS=Staphylococcus aureus (strain N315) GN=acpS PE=3 SV=1 ACPS_STAAM - Holo-[acyl-carrier-protein] synthase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=acpS PE... gi\|227558846, gi... - gi\|227558846\|ref\|ZP_03988893.1\| holo-ACP synthase [Staphylococcus aureus subsp. aureus MN8], gi\|2272... ACPS_STAAS - Holo-[acyl-carrier-protein] synthase OS=Staphylococcus aureus (strain MSSA476) GN=acpS PE=3 SV=1 gi\|227899590, gi... - gi\|227899590\|ref\|ZP_04017395.1\| holo-ACP synthase [Staphylococcus aureus subsp. aureus TCH60], gi\|22... gi\|251812358, gi... - gi\|251812358\|ref\|ZP_04826831.1\| holo-ACP synthase [Staphylococcus aureus subsp. aureus TCH70], gi\|25... gi\|25304180 - pir\|\|E89999 holo-ACP synthase [imported] - Staphylococcus aureus (strain N315) ACPS_STAAB - Holo-[acyl-carrier-protein] synthase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=acpS ... gi\|253315701 - gi\|253315701\|ref\|ZP_04838914.1\| 4'-phosphopantetheinyl transferase [Staphylococcus aureus subsp. aur... ACPS_STAAR - Holo-[acyl-carrier-protein] synthase OS=Staphylococcus aureus (strain MRSA252) GN=acpS PE=3 SV=1 gi\|253728928, gi... - gi\|253733095\|ref\|ZP_04867260.1\| holo-ACP synthase [Staphylococcus aureus subsp. aureus TCH130], gi\|2... ACPS_STAA2 - Holo-[acyl-carrier-protein] synthase OS=Staphylococcus aureus (strain JH1) GN=acpS PE=3 SV=1 gi\|255006860 - gi\|255006860\|ref\|ZP_05145461.2\| 4'-phosphopantetheinyl transferase [Staphylococcus aureus subsp. aur... ACPS_STAA9 - Holo-[acyl-carrier-protein] synthase OS=Staphylococcus aureus (strain JH9) GN=acpS PE=3 SV=1 ACPS_STAA1 - Holo-[acyl-carrier-protein] synthase OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=acpS PE=...	141.0	[0..1]	[119..1]
gi\|9798536 - gi\|9798536\|emb\|CAC03496.1\| hypothetical protein [Lactobacillus reuteri]	140.0	[0..1]	[117..21]
ACPS_GEODF - Holo-[acyl-carrier-protein] synthase OS=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) G...	139.0	[0..1]	[118..1]

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Predicted Domain #1

Region A:
Residues: [1-119]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVFGTGVDNV ELSRIQKALT RSERFVEQVL TAVELEKYNS FQSTARKTEF LAGRWAAKEA  60
   61 FSKAYGTGFG KALGMHDLEI KNDELGKPFF TKHPFDGQVH LSISHSNLEA VAFVVLEKN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.0
Match:	1fteA
Description:	Holo-(acyl carrier protein) synthase ACPS
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
holo-[acyl-carrier-protein] synthase activity	3.16041523883346	bayes_pls_golite062009
phosphotransferase activity, for other substituted phosphate groups	3.07692326713136	bayes_pls_golite062009
catalytic activity	1.85383781679828	bayes_pls_golite062009
transferase activity	0.733560176609492	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.571740867528267	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: