YRC Public Data Repository - Protein Structure Prediction

Protein:	ACKA_ECOLI
Organism:	Escherichia coli
Length:	400 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ACKA_ECOLI.

Description	E-value	Query Range	Subject Range
ACKA_CARHZ - Acetate kinase OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-2901) GN=ack...	590.0	[0..5]	[399..2]
ACKA_THEMA - Acetate kinase OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=ackA PE=1... ACKA_THEMA - Acetate kinase OS=Thermotoga maritima GN=ackA PE=1 SV=1	584.0	[0..5]	[399..2]
ACKA_THETC - Acetate kinase OS=Thermoanaerobacterium thermosaccharolyticum (strain ATCC 7956 / DSM 571 / NCIB 938... gi\|3006124 - gi\|3006124\|emb\|CAA06175.1\| acetate kinase [Thermoanaerobacterium thermosaccharolyticum]	579.0	[0..5]	[399..2]
ACKA_PHOLL - Acetate kinase OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01) G... ACKA_PHOLL - Acetate kinase OS=Photorhabdus luminescens subsp. laumondii GN=ackA PE=3 SV=1	573.0	[0..1]	[400..1]
ACKA_CLOTM - Acetate kinase (EC 2.7.2.1) (Acetokinase) - Clostridium thermocellum ACKA_CLOTH - Acetate kinase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 / NCIMB 10682... gi\|196196580, gi... - gi\|196254012\|ref\|ZP_03152607.1\| acetate kinase [Clostridium thermocellum DSM 4150], gi\|196196580\|gb\|...	573.0	[0..6]	[399..3]
ACKA_DESHD - Acetate kinase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=ackA PE=3 SV=1	571.0	[0..5]	[399..2]
gi\|23092548\|gb\|A... - acetate kinase [Photorhabdus temperata] gi\|23092548 - gi\|23092548\|gb\|AAN08359.1\| acetate kinase [Photorhabdus temperata]	571.0	[0..1]	[400..1]
gi\|77956855, gi\|... - gi\|77956855\|ref\|ZP_00820930.1\| COG0282: Acetate kinase [Yersinia bercovieri ATCC 43970], gi\|23878567... gi\|238799411, gi... - gi\|77960597\|ref\|ZP_00824461.1\| COG0282: Acetate kinase [Yersinia mollaretii ATCC 43969], gi\|23879941...	571.0	[0..1]	[400..1]
ACKA_CALS8 - Acetate kinase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903 / Tp8T 6331) GN...	571.0	[0..5]	[399..2]

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Predicted Domain #1

Region A:
Residues: [1-400]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSKLVLVLN CGSSSLKFAI IDAVNGEEYL SGLAECFHLP EARIKWKMDG NKQEAALGAG  60
   61 AAHSEALNFI VNTILAQKPE LSAQLTAIGH RIVHGGEKYT SSVVIDESVI QGIKDAASFA 120
  121 PLHNPAHLIG IEEALKSFPQ LKDKNVAVFD TAFHQTMPEE SYLYALPYNL YKEHGIRRYG 180
  181 AHGTSHFYVT QEAAKMLNKP VEELNIITCH LGNGGSVSAI RNGKCVDTSM GLTPLEGLVM 240
  241 GTRSGDIDPA IIFHLHDTLG MSVDAINKLL TKESGLLGLT EVTSDCRYVE DNYATKEDAK 300
  301 RAMDVYCHRL AKYIGAYTAL MDGRLDAVVF TGGIGENAAM VRELSLGKLG VLGFEVDHER 360
  361 NLAARFGKSG FINKEGTRPA VVIPTNEELV IAQDASRLTA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	167.0
Match:	2iirA
Description:	No description for 2iirA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits