YRC Public Data Repository - Protein Structure Prediction

Protein:	ACBP_CHAVI
Organism:	Chaetophractus villosus
Length:	86 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ACBP_CHAVI.

Description	E-value	Query Range	Subject Range
gi\|73949054 - gi\|73949054\|ref\|XP_848899.1\| PREDICTED: similar to Acyl-CoA-binding protein (ACBP) (Diazepam binding...	123.0	[0..2]	[86..214]
gi\|12052810 - gi\|12052810\|emb\|CAB66577.1\| hypothetical protein [Homo sapiens]	121.0	[0..1]	[83..39]
gi\|73586638, gi\|... - gi\|77735439\|ref\|NP_001029414.1\| peroxisomal D3,D2-enoyl-CoA isomerase [Bos taurus], gi\|73586638\|gb\|A...	118.0	[0..1]	[80..38]
ACBD5_XENTR - Acyl-CoA-binding domain-containing protein 5 OS=Xenopus tropicalis GN=acbd5 PE=2 SV=1	118.0	[0..2]	[86..9]
ACBD5_XENLA - Acyl-CoA-binding domain-containing protein 5 OS=Xenopus laevis GN=acbd5 PE=2 SV=1	117.0	[0..2]	[86..9]
gi\|73746605 - gi\|73746605\|gb\|AAZ82211.1\| diazepam-binding protein [Nomascus gabriellae]	117.0	[0..1]	[86..19]
gi\|109069481 - gi\|109069481\|ref\|XP_001094776.1\| PREDICTED: similar to peroxisomal D3,D2-enoyl-CoA isomerase isoform...	117.0	[0..1]	[77..37]
gi\|109505315 - gi\|109505315\|ref\|XP_225630.4\| PREDICTED: similar to acyl-Coenzyme A binding domain containing 5 [Rat...	116.0	[0..2]	[86..279]
gi\|74218089 - gi\|74218089\|dbj\|BAE42023.1\| unnamed protein product [Mus musculus]	116.0	[0..1]	[77..24]

Back

Predicted Domain #1

Region A:
Residues: [1-86]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SQAEFDKAAE EVKNLKTKPA DDEMLFIYSH YKQATVGDIN TERPGMLDFK GKAKWDAWNQ  60
   61 LKGTSKEDAM KSYIDKVEEL KKKYGI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.69897
Match:	2fj9A
Description:	No description for 2fj9A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits