YRC Public Data Repository - Protein Structure Prediction

Protein:	4EBP1_MOUSE
Organism:	Mus musculus
Length:	117 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for 4EBP1_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|31542600, gi\|... - gi\|31542600\|ref\|NP_031944.2\| eukaryotic translation initiation factor 4E binding protein 1 [Mus musc...	174.0	[0..1]	[117..1]
4EBP1_RAT - Eukaryotic translation initiation factor 4E-binding protein 1 OS=Rattus norvegicus GN=Eif4ebp1 PE=1 ...	172.0	[0..1]	[117..1]
EIF4EBP2 - eukaryotic translation initiation factor 4E binding protein 2 gi\|55634971 - gi\|55634971\|ref\|XP_508163.1\| PREDICTED: similar to Eukaryotic translation initiation factor 4E bindi... ENSMMUT000000325... - null, null gi\|60656297, gi\|... - gi\|60656299\|gb\|AAX32713.1\| eukaryotic translation initiation factor 4E binding protein 2 [synthetic ...	171.0	[0..2]	[117..4]
gi\|60652549, gi\|... - gi\|60652549\|gb\|AAX28969.1\| eukaryotic translation initiation factor 4E binding protein 1 [synthetic ...	171.0	[0..1]	[117..1]
gi\|47223260 - gi\|47223260\|emb\|CAF98644.1\| unnamed protein product [Tetraodon nigroviridis]	168.0	[0..6]	[117..2]

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Predicted Domain #1

Region A:
Residues: [1-117]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAGSSCSQT PSRAIPTRRV ALGDGVQLPP GDYSTTPGGT LFSTTPGGTR IIYDRKFLME  60
   61 CRNSPVAKTP PKDLPAIPGV TSPTSDEPPM QASQSQLPSS PEDKRAGGEE SQFEMDI

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	47.886057
Match:	PF05456.2
Description:	No description for PF05456.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits