| Protein: | shk-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 448 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for shk-1.
| Description | E-value | Query Range |
Subject Range |
|
|
303.0 | [0..27] | [445..1] |
|
Region A: Residues: [1-448] |
1 11 21 31 41 51
| | | | | |
1 MWRFNRIKSR AAEMASGNSE EGKGMLLRNG DDRIRLPSPQ RGTPDTSSTQ GHPYTDQIVT 60
61 INVSGMRFQT FESTLSRYPN SLLGDRNKRQ HFFVSDTNEF FFDRHRTTFE SILYIYQSGG 120
121 RVKRPEIVPI DIFLKEMRFF QMGDDLLEEF WIAEGYEKPK EVMMPNNKTQ RKIWELMEYP 180
181 DSSLSARIIA FISIAVIALS IISFCWETVP SDIEEKPINN SATAELLDEM DEKHYSPFFW 240
241 IELMCILWFT IELILRFISC PCKVTFATSV LNIIDFVAIA PFFVNFFFAD TSKSNSSMSF 300
301 AVLRVLRLVR VFRVFKLSRH SVGLQILGKT FRSSVQEFCL LIFFMAIALV LFASGMYFAE 360
361 QGEPNSKFTS IPASFWFVLV TMTTVGYGDL VPLSPFGKVV GGMCAMIGVL TLALPVPIIV 420
421 ANFKHFYRQE NRLASMKSKG DDADDDIA
|
| Detection Method: |  |
| Confidence: | 80.39794 |
| Match: | 2a79B |
| Description: | Mammalian Shaker Kv1.2 potassium channel- beta subunit complex |
Matching Structure (courtesy of the PDB): |
|
