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View Structure Prediction Details

Protein: CE36757
Organism: Caenorhabditis elegans
Length: 244 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE36757.

Description E-value Query
Range
Subject
Range
GAR1_RAT - H/ACA ribonucleoprotein complex subunit 1 OS=Rattus norvegicus GN=Gar1 PE=2 SV=1
194.0 [0..52] [156..64]

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Predicted Domain #1
Region A:
Residues: [1-44]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFRGGRGGG GGFRGGRGGG GGGGFRGGRG GDRGGGFRGG RGGF

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.01
Match: 1wckA
Description: Crystal structure of the C-terminal domain of BclA, the major antigen of the exosporium of the Bacillus anthracis spore.
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [45-163]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGGGRGGYDQ GPPEEVVLVG VFSHQCQDDI VCNNTSGKIP YFNAPIYFKN KEQVGKIDEI  60
   61 FGSPGENGFS VTLSQGVKAS SFEPESQLYI DPGKLLPVDR FLPQAGGGRG RGGRGRGGD

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 63.259637
Match: PF04410.5
Description: No description for PF04410.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [164-244]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RGGRGSDRGG RGGFGRGGGG GFRGGDRGGF GGGRGGFRGG DRGGFRGGRG GDFGGRGRGD  60
   61 FKRSYDGGSF GGQNNKRTKF E

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle