YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: unc-50
Organism: Caenorhabditis elegans
Length: 301 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for unc-50.

Description E-value Query
Range
Subject
Range
gi|157773669 - gi|157773669|ref|XP_001664900.1| hypothetical protein CBG24612 [Caenorhabditis briggsae AF16]
gi|187039993, gi... - gi|39580129|emb|CAE56800.1| Hypothetical protein CBG24612 [Caenorhabditis briggsae], gi|187039993|em...
373.0 [0..1] [301..43]

Back

Predicted Domain #1
Region A:
Residues: [1-178]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSQPRGSGT QPGPSQSPIS QRNFRYEPAR SGYTSPGQYS TYSTSTADRV GCLTAVRMSA  60
   61 FAKLSRFTRR LVHIRQMDFE FALWQMLYLL IQPSKVYKNF IYRKRTKDQF ARDDPAFLVL 120
  121 LALSLLFSSI FYAYALGLEK IGFFTFFLWS VFVDCIGVGV VIATVLWWVS NRFLRKVR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [179-301]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DQDVEWGYCF DVHLNAFFPM LILLHVIVPI LYPTLIDSPA FLSILLGNTF WFLAACYYVY  60
   61 ITFLGYTALP ILHKTQYFLY PISFIFMFFV ATLTGGWNIS RTALNFYHSR AEPHKFAPQH 120
  121 GGL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle