YRC Public Data Repository - Protein Structure Prediction

Protein:	CE36889
Organism:	Caenorhabditis elegans
Length:	325 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE36889.

Description	E-value	Query Range	Subject Range
CE19418 - status:Predicted UniProt:Q9TXX3 protein_id:AAC78183.1	415.0	[0..31]	[251..29]

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Predicted Domain #1

Region A:
Residues: [1-237]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELLQSMVIL IMLLLTVSLS FGKREGDSFV KYCPLGQFAF AMQIKSEKQP QPLLGMALYC  60
   61 EKISTILGLE NTITDDTVRI QFDENAKDWN TRLRCPHQSG IMGIDVKYGK HGEFIELTVY 120
  121 CGAPFDSEQN RTTMNGKKIN EKEMSAISKG FLKAIGDSES MLVNKINSDP RMGDDKYTVV 180
  181 SFKAEIEEAF KNSRKQKFFY NTGPDTSTSI NQLTIYAGEH RVGLKKCIMF ENGRQVP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [238-325]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NTSTGGGSQK LNVLKQINKT LKFLFKFKTT IRDSWPSYNP PSFASFSAAP RAKYHCTPSL  60
   61 NQRPEDPQNI QRQSFFSLKN VEYMSASC