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View Structure Prediction Details

Protein: CE37039
Organism: Caenorhabditis elegans
Length: 184 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE37039.

Description E-value Query
Range
Subject
Range
nos-2 - status:Confirmed UniProt:Q23406 protein_id:AAB93424.1
258.0 [0..5] [184..80]

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Predicted Domain #1
Region A:
Residues: [1-79]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRDDCDTTQ NPPPAEYRRL PTFLSTNNSG FFDSVVASDF NLYGKFNDWL NDSKPRSGSF  60
   61 AIESAEELAR NPRETRSEP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [80-184]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EVPSLFKRRE YGCGYCRSVG YMRWETHTRK KCDKLSSLAP CKICGARGEM NHTETYCPMK  60
   61 PSSQLSFNED FSRDFENRRF QRSRYQFYKH SSLIQKIYAS SEDSF

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.23
Match: 2cqfA
Description: Solution Structure of the Zinc-finger domain in LIN-28
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle