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View Structure Prediction Details

Protein: CE37138
Organism: Caenorhabditis elegans
Length: 446 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE37138.

Description E-value Query
Range
Subject
Range
gi|39594046, gi|... - gi|39594046|emb|CAE70156.1| Hypothetical protein CBG16623 [Caenorhabditis briggsae], gi|187026405|em...
gi|157774895 - gi|157774895|ref|XP_001665513.1| hypothetical protein CBG16623 [Caenorhabditis briggsae AF16]
425.0 [0..80] [446..11]

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Predicted Domain #1
Region A:
Residues: [1-127]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFGGIRDRLF RFQKHNRSAR NEFLGTHPTL PVPEDILDPF VGRSTRPTES LTEPPVATQT  60
   61 TQTVFLKPSD TPNQDISALD KSVDHSHLHK DHSIHHPTPP RSFFSSSSLA VHPNVETAQS 120
  121 SSEEDLR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [128-446]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPNIKVFSGS SHPDLSTRIC ERLQLEVSKA SLKKFSNKET NVEIGESVRG EDVYIIQSAA  60
   61 GEINDNLMEL LIMINACKIA SSCRVAAVIP AFPYARQDKK DKSRAPISAK LVANMLSVAG 120
  121 ADHIITMDLH ASQIQGFFDI PVDNLYAEPA ILKYIKESIP NWQTSVIVSP DAGGAKRVTS 180
  181 IADRLNVDFA LIHKESKRAN EVEKMTLVGS VEGKVAILVD DMADTCGTIC MAADKLVEAG 240
  241 ADKVYAFCVH GIFSGPALTR LNASKFEAVV VTNTIPQDEN MKKCSKIQCI DISMILAEAI 300
  301 RRTHNGESVS YLFSHVPIC

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 113.0
Match: 2h06A
Description: No description for 2h06A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle