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View Structure Prediction Details

Protein: CE36883
Organism: Caenorhabditis elegans
Length: 467 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE36883.

Description E-value Query
Range
Subject
Range
CE37658 - status:Partially_confirmed UniProt:Q5ZR77 protein_id:AAV28339.1
314.0 [0..1] [467..1]

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Predicted Domain #1
Region A:
Residues: [1-151]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKTEATFSL LDEEEERDEV GPSTVLVPGR PSLRSISLSQ APSAPRDLEN GNGQTSCAEL  60
   61 HKLTAGSTTS LSSQSKNAKK VNKFYKKQNE LLENFKNDSE QIEQFNRTRR RTTSKEEDDD 120
  121 ADVIAAIPPP IPEEKAVVAP LVKHIKPMER T

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [152-467]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DTEEKSVDEK KDDESNTAAR MANITLAVNF LLMIAKVVAS VLSGSMSIIS SMVDSVVDIT  60
   61 SGLVISLSER MIKKRDPYLY PRGRTRLEPL SLILISVIMG MASIQLIIAS VRGIHDGIQF 120
  121 HLYGIGEEPK LNVTITSVVI MVSTVLVKLS LYLFCKRYKE PSVNVLAMDH RNDCISNTVA 180
  181 LICAWLGTKY SYYFDPAGAI VVSMYILYTW VQTGREHLAK LSGKTAEPEF INRIIKVCLD 240
  241 HDARISHIDT VYVYHFGSKF LVEVHIVLDE NMILKESHDI SETLQSNIES LPEVERAFVH 300
  301 TDYDYDHHPH DEHKIV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 59.09691
Match: 2qfiA
Description: No description for 2qfiA was found.

Predicted functions:

Term Confidence Notes
transporter activity 0.0225298510244101 bayes_pls_golite062009
transmembrane transporter activity 0.00888573638791978 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle