YRC Public Data Repository - Protein Structure Prediction

Protein:	dlc-2
Organism:	Caenorhabditis elegans
Length:	90 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for dlc-2.

Description	E-value	Query Range	Subject Range
gi\|76642713 - gi\|76642713\|ref\|XP_593596.2\| PREDICTED: similar to dynein light chain-2 [Bos taurus]	190.0	[0..1]	[89..152]
gi\|50758408 - gi\|50758408\|ref\|XP_415908.1\| PREDICTED: similar to dynein light chain-2 [Gallus gallus]	190.0	[0..1]	[89..434]
gi\|112418924 - gi\|112418924\|gb\|AAI22095.1\| Dnl2 protein [Danio rerio]	172.0	[0..1]	[89..37]
gi\|47168753, gi\|... - gi\|47168753\|pdb\|1RE6\|B Chain B, Localisation Of Dynein Light Chains 1 And 2 And Their Pro- Apoptotic...	170.0	[0..1]	[89..6]
gi\|72044059, gi\|... - gi\|72046933\|ref\|XP_785110.1\| PREDICTED: similar to dynein light chain-2 [Strongylocentrotus purpurat... DYL1_ANTCR - Dynein light chain LC6, flagellar outer arm OS=Anthocidaris crassispina PE=3 SV=1 DYL1_HELCR - Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina PE=3 SV=1	170.0	[0..1]	[89..1]
gi\|38048413, gi\|... - gi\|38048413\|gb\|AAR10109.1\| similar to Drosophila melanogaster ctp [Drosophila yakuba], gi\|195477050\|... gi\|156547267 - gi\|156547267\|ref\|XP_001602336.1\| PREDICTED: similar to cytoplasmic dynein light chain 1 [Nasonia vit... gi\|220951882 - gi\|220951882\|gb\|ACL88484.1\| ctp-PA [synthetic construct] gi\|198469256, gi... - gi\|198469256\|ref\|XP_002134258.1\| GA25980 [Drosophila pseudoobscura pseudoobscura], gi\|198146786\|gb\|E... gi\|194161004, gi... - gi\|195433849\|ref\|XP_002064919.1\| GK15188 [Drosophila willistoni], gi\|194161004\|gb\|EDW75905.1\| GK1518... ctp-PB, ctp-PC, ... - The gene cut up is referred to in FlyBase by the symbol Dmel\ctp (CG6998, FBgn0011760). It is a prot... gi\|121543715 - gi\|121543715\|gb\|ABM55544.1\| dynein light chain 1, cytoplasmic-like protein [Maconellicoccus hirsutus... gi\|190648556, gi... - gi\|194888380\|ref\|XP_001976907.1\| GG18720 [Drosophila erecta], gi\|190648556\|gb\|EDV45834.1\| GG18720 [D... gi\|193687024 - gi\|193687024\|ref\|XP_001947701.1\| PREDICTED: similar to cut up CG6998-PA [Acyrthosiphon pisum] gi\|195386040, gi... - gi\|195386040\|ref\|XP_002051712.1\| GJ17036 [Drosophila virilis], gi\|194148169\|gb\|EDW63867.1\| GJ17036 [... gi\|195340767, gi... - gi\|195340767\|ref\|XP_002036984.1\| GM12359 [Drosophila sechellia], gi\|194131100\|gb\|EDW53143.1\| GM12359... gi\|662195013\|ref... - PREDICTED: dynein light chain 1, cytoplasmic [Diaphorina citri], PREDICTED: dynein light chain 1, cy... gi\|195114680, gi... - gi\|195114680\|ref\|XP_002001895.1\| GI14563 [Drosophila mojavensis], gi\|193912470\|gb\|EDW11337.1\| GI1456... gi\|195034398, gi... - gi\|195034398\|ref\|XP_001988887.1\| GH11410 [Drosophila grimshawi], gi\|193904887\|gb\|EDW03754.1\| GH11410...	168.0	[0..1]	[89..1]

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Predicted Domain #1

Region A:
Residues: [1-90]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEEKIEVKE TDMEDPQRDM VISVVREAQR LYNIDKDVAA FVKEELDKKF GATWHVICGK  60
   61 CFGSRVSYEM GHFILLKCNK VNVMIYKCGY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.154902
Match:	1re6A
Description:	Localisation of Dynein Light Chains 1 and 2 and their Pro-apoptotic Ligands
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits