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View Structure Prediction Details

Protein: nas-11
Organism: Caenorhabditis elegans
Length: 455 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nas-11.

Description E-value Query
Range
Subject
Range
nas-11 - status:Partially_confirmed UniProt:Q21432 protein_id:AAC46566.2
586.0 [0..1] [400..1]

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Predicted Domain #1
Region A:
Residues: [1-321]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPSLVFLIV VIVVVEGQGW RPWDRFNHPG NFGNWGGNNW GTRQRNQEPH DIPPPVPPPG  60
   61 FRGNNDRFGG NIIKVVEIID LGKSKNRGDI LSDFKDVHKK HRHLGRKEWK GKVKQFCHRF 120
  121 PGHPNCRRGK VPDQKELEEM IGQFSKGGIG RFLKRVPKIY IEDPLARVDP KLKGFLENAG 180
  181 RGFGHVSSEH VNKLRDICKR RKCREQPESA KKTRELFTQK LADFETKIAG KDKTDSVQLR 240
  241 FDRTLQIKEA LLEKGNLTAD IVPVDNGVYD LDTMLTEEQA NILLNELNKA GVGDDEIPLP 300
  301 DADTDDEDDD DSTNSASGAA P

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [322-455]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSSRLKKSAL YFEGNLIKKW DPSSPIRYVL DSSLEDLDKN DVRAAIYEIE KNTCIRFKEL  60
   61 SSPPTGSHIV YYKVDSPTLT KELQFMKQCM RSELPISTFA MIVINLLLLI GVTLIHNNTM 120
  121 HLLWWIQNCT LHTE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.69897
Match: 1astA
Description: STRUCTURE OF ASTACIN AND IMPLICATIONS FOR ACTIVATION OF ASTACINS AND ZINC-LIGATION OF COLLAGENASES
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle