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View Structure Prediction Details

Protein: twk-24
Organism: Caenorhabditis elegans
Length: 579 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for twk-24.

Description E-value Query
Range
Subject
Range
twk-24 - potassium channel protein status:Confirmed UniProt:Q20817 protein_id:CAB01568.1
223.0 [0..1] [579..1]

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Predicted Domain #1
Region A:
Residues: [1-303]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGTTKKDDK IVAGRSKSAD SKWKDRMNRG LGNMSKSLPS FNKNAANAKS DKTSDTKVVI  60
   61 EDESKKKKKK KKKDKNLDVE ELPQQEDPEV LAAKEKEKKA KVMIASRDAR NKTMWRHIAW 120
  121 LVVLFSFSLF GGVIFSAIEG GYETTQLIKK FEHEKDVYER RKIYQEQLFQ RLREIEHDNT 180
  181 NPRGRNSSRE HFKLEQSRHA LEWYEQKMGV TIEEPQMRET KWNLWGGVYY SASLYTTIGY 240
  241 GNFHPLTKSG RIISMMYACI GIPLVFTILL DWGFLYFTWI EYGWNRFNEN FCQKSLQRDM 300
  301 QRR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 40.0
Match: 2a79B
Description: Mammalian Shaker Kv1.2 potassium channel- beta subunit complex
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [304-579]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IRRERIRRVG SELSLSSTAP LLHRTTTQLS NPVQHIESNH PLSPLDVDVP MGEQVQTVPI  60
   61 KSAAIFFFLW IMISAFIVRL WEYEWTYFTA FYFFFTSLTT IGLGDVVTKT PNFIIFNLAM 120
  121 TLIGLSVVGL CAAIVQAKVK LVFDRMLRSI DAQYRIRQVD PHVATMSIVE DEEEGVKRLI 180
  181 QSQSLEDRII FLFVDEHKKS MLKERWKQKS TMVNRITQTY PSKADKYVQT GQRVYDQRQG 240
  241 SDEDLSDEDE EDVEYDELGN KIIPPPIRRY IYTVFD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.0
Match: 2qksA
Description: No description for 2qksA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle