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View Structure Prediction Details

Protein: CE36546
Organism: Caenorhabditis elegans
Length: 493 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE36546.

Description E-value Query
Range
Subject
Range
gi|19713472, gi|... - gi|19713472|gb|AAL94263.1| Fumarate reductase flavoprotein subunit [Fusobacterium nucleatum subsp. n...
306.0 [0..5] [490..111]

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Predicted Domain #1
Region A:
Residues: [1-493]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASVLHAEPT VVVVGGGLAG LSASLDIING GGRVILVEGE GNTGGNSAKA SSGINGAGTE  60
   61 TQEKLGIKDS PELLVKDTLS AGDSENDKKL VEILAANSAD AVEFLRGVEV DLTDVNLCGG 120
  121 HSVPRTHWIP SPKEGRPIPA GFEIMKRLRT RLNEKQSENP EAFKLLTQTK MVGILRENGK 180
  181 VSGIEIVTSA SGEKSKIIGD AVILATGGFS ADETLLKEFG AEIFGFPTTN GAFAKGDGVK 240
  241 IARALGAKII GMENIQIHPT AFVDPKDPSA GTKFLAAEAI RGKGALLINS KGQRFGNELG 300
  301 RRDYLTGKIL ELAEPIEESF QGGSAGRNAA IMIMNEANVE AFGRPAFNFY SIVKKFFAKY 360
  361 ENSAELAKAL GIDESAIKTT LEEYQKSFDG KSEDPFGKKV FPVSAISPTE PIYAAIVVPA 420
  421 IHYTMGGLKI DEATRVIDEH GKPIVGLFAA GEVTGGVHGS NRLAGNSLLE CVVFGRIAGK 480
  481 SAAQSAAETR TEL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 73.39794
Match: 1qo8A
Description: Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain; Flavocytochrome c3 (respiratory fumarate reductase)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
L-aspartate oxidase activity 7.97437641217089 bayes_pls_golite062009
aspartate oxidase activity 7.32727957948448 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors, quinone or related compound as acceptor 3.70791057697947 bayes_pls_golite062009
succinate dehydrogenase (ubiquinone) activity 3.70791057697947 bayes_pls_golite062009
oxidoreductase activity 3.19495080984613 bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH 2.84060092432585 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor 2.52207884417451 bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors, NAD or NADP as acceptor 2.26549080531565 bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors 2.11247286526577 bayes_pls_golite062009
dihydrolipoyl dehydrogenase activity 1.91979117253135 bayes_pls_golite062009
catalytic activity 1.56773888754354 bayes_pls_golite062009
binding 1.2242882154922 bayes_pls_golite062009
oxygen-dependent protoporphyrinogen oxidase activity 0.71497408952162 bayes_pls_golite062009
fumarate reductase (NADH) activity 0.65260793370113 bayes_pls_golite062009
electron carrier activity 0.511623955786613 bayes_pls_golite062009
succinate-CoA ligase activity 0.468246082354334 bayes_pls_golite062009
coenzyme binding 0.424849261981 bayes_pls_golite062009
protein binding 0.0171008177759692 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
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