| Protein: | ptc-2 |
| Organism: | Caenorhabditis elegans |
| Length: | 667 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ptc-2.
| Description | E-value | Query Range |
Subject Range |
|
|
294.0 | [0..7] | [666..520] |
|
Region A: Residues: [1-523] |
1 11 21 31 41 51
| | | | | |
1 MSENMYPQNV DYAAEMTGGC SGFASNVLNW PEDMILGNPR RAKKGGKLSG ADALQFVFLV 60
61 ASPADVFLRF KQSLEETLET LSLYEEHCIH LHRHPLLICS RNSVNSTIPS SLLDMLSCWH 120
121 MLLLLILDLT TAFRLQNHQW GFALAGVLVV TFASVAGIGL ATWFGIEFNA ATTQIVPFLT 180
181 LGIGVDNMFM LLHNYRDVVK LAGGHAEMAI LMRETGMSIL CTSINNILSF LTGTLLPIPA 240
241 LRSFCAQSSI LLTFNFIAIL TIYPAIISID LRRKKAQRRD FDTREESTSE ASIMQQFDGI 300
301 TQAQMASSDD PAPWSLHSFI RYYYIPFISK PASKVAIIVG CCALLGASFV GMRQSTLGLE 360
361 LGDVLPEHTA PAQFLRARDK YFSFYPMFAV IKGPNIDYAH QQRQIDNYRQ SIGSSKYVIK 420
421 NKNEEPSEKY WLGLMRDWLI SIQRGFDEEV AKGSFNLTSG TVIGSNVSED ARLAHALMCS 480
481 HGSLFECAGR IGKIRLIPFY LTGLTDTAVI VDAIKDIRSV CER
|
| Detection Method: |  |
| Confidence: | 72.522879 |
| Match: | 1oy6A |
| Description: | Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains; Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains; Multidrug efflux transporter AcrB transmembrane domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [524-667] |
1 11 21 31 41 51
| | | | | |
1 FTDQGLPNFP QGIAFTFWEQ YLFLTGNLMQ AISIITISVF CVISVLLFNP WAALMVVCIL 60
61 GIMTCELAGF MGLVGIKLNP VSAVTLITAV GIGVEFTVHV VVSFLTALGT RSQRTSSAVD 120
121 RVFVPVIHGS FSTLLGILML GFSV
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
