YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: rde-2
Organism: Caenorhabditis elegans
Length: 578 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rde-2.

Description E-value Query
Range
Subject
Range
rde-2 - status:Partially_confirmed UniProt:Q58AA4 protein_id:CAI70415.1
1115.0 [0..1] [578..1]

Back

Predicted Domain #1
Region A:
Residues: [1-98]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHNGYHSYFP PNHYYAQSQP SSSYNPQPQI QQPQTQIYGL VVGYNKYGNR NYLFYTKNID  60
   61 GFVEISGNIQ SLQIGRWLKL TVCQNFVGQY VLDSSNSC

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [99-283]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GYENWDVLPN HRNSSARFFP KYEANDEGEI LITARFDVIV DRKNNLYDFT SYDISYDHII  60
   61 DDFSLIKSSC QHYDGRSFIV EAQASLAGWV ALSVHEDPQK LHTCDAVSRN GYQSLPNPVV 120
  121 DSDVQYLHDT RLLDIMTGNG YVQTPETDVQ DQQSSQHQED VHSQMNSQTS DSYNSSRVVS 180
  181 ENREI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [284-477]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPETFRSQSI ELNQVDSSLS QTTISSRAAP VIDSNQLSDE DEIDDEDTYG TRGTSNIPMR  60
   61 PFIKDLAPTM LQLLRQDKTD SEKPQSALCT VVQKIDGFAI LYTAKRDVIN VLLQERSCEG 120
  121 LERSPQLGDV AFFDILPRRI ETKDRLIFKI PYTHIAVKKK PDTPDSLLKI DCFKNSVRCF 180
  181 GGVLEMKVKI ALSK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [478-578]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PELVVEQYHD NTEMNSDHHF YYLKATNGVL VTIPKERLLN HLNSKLSADF DLIAWVVHRK  60
   61 PIGNVSLHIG KGGEAYQQFT NGDIRELPPL SSNQYFMNVR K

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle