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View Structure Prediction Details

Protein: srz-56
Organism: Caenorhabditis elegans
Length: 356 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for srz-56.

Description E-value Query
Range
Subject
Range
srz-66 - status:Partially_confirmed UniProt:Q9XV27 protein_id:CAB04367.1
216.0 [0..2] [324..24]

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Predicted Domain #1
Region A:
Residues: [1-356]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSTSFFDQL QDIQYAYNFT SFLMLLPIPC FLIVNVLITP FYMFVYKQNI KRDEKMPIFP  60
   61 LMNHFYKMTR TTTVIILFII LGLFMCFFTQ SKNRIFALAS LFPVLLLMES LVILTQVYHW 120
  121 LIFLLAAERA IIYFFPSSEK RVLSILKSIH ANIHYIYIYH LLIILMLKIG FRRGRMFKNA 180
  181 YWYNPELLFW SWHMLGYILL IISALLYLPI MISVRKLSHL ASAQENKPQK YIFWQTMIVV 240
  241 IFQLISLVQS LTLVLINKET EEIDMVLLTF TMMIMDTAYA PLIIQTCYLG CNKRNVKMLV 300
  301 TSRNLKKLVI VVCDSNDSAV HATVCNSYFH YVICISDWPS GKHLKSRKPD LKREFY

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.977
Match: 1f88A
Description: Rhodopsin
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle