| Protein: | tmd-2 |
| Organism: | Caenorhabditis elegans |
| Length: | 639 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tmd-2.
| Description | E-value | Query Range |
Subject Range |
|
|
288.0 | [0..1] | [244..145] |
|
Region A: Residues: [1-247] |
1 11 21 31 41 51
| | | | | |
1 MEEELQQLRT NASSDLMTDE DFIATIESMG VEAQEREIND LLKAMHENRI VSWDEAERIL 60
61 METDQTPIKC SLPEQTRPTE PENEVDVDQC IKKLLDNDPS LKEINLNNMK RTPVPAIKRL 120
121 LEALAYNEHC ERISLANMGL YDHDINVLVT VIEMNQAIKK VNLETNYLSG DFFSKLFKAA 180
181 LVNESVEEIK AVNQGVSFST QSEKEIIDAI VKNHGLTKIS INFRLPEGRH KVENATLRNG 240
241 ELKRVKR
|
| Detection Method: |  |
| Confidence: | 54.69897 |
| Match: | 1io0A |
| Description: | Tropomodulin C-terminal domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [248-459] |
1 11 21 31 41 51
| | | | | |
1 REAAQKARLE AEELAKNPVP KLAPEPKKEP EPKKMAPKIP PAVPKSLVSP EPKPSLAPKA 60
61 APVIATAPPK STILMKQLSF QRASRESEED TEFVPPPAVP EPPKKLAIPK TFMKKEETPS 120
121 FQKVAKRPTR QWEPKKQESL EQEEHKETVK EEVKKEEVKE KVPAKVERKH WEPKVAPAPV 180
181 IDGYAPILDV SGNAAPSTAK PKLDGAPIRA KR
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [460-639] |
1 11 21 31 41 51
| | | | | |
1 PPITAKNIWE QRMAKIEKKE EKKKPLLSIQ KIREMEKNDV IKKEEDDRLE QLLKKEKEPK 60
61 KLNNEHRKLF ENGNVAQKKP EPRRHVQKLI AKKPNSILNQ TEPTKIEGPD KQETRPTTVI 120
121 RRTVIRKKEE MVPSEKPEVS ENEKPKRRLV RKKKVVEGDG MNGTNGHQSH LTSAPPQAVH 180
181
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
