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View Structure Prediction Details

Protein: CE36973
Organism: Caenorhabditis elegans
Length: 498 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE36973.

Description E-value Query
Range
Subject
Range
gi|1747306, gi|6... - gi|6677899|ref|NP_033172.1| ferric-chelate reductase 1 [Mus musculus], gi|1747306|dbj|BAA09055.1| SD...
279.0 [0..21] [496..189]

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Predicted Domain #1
Region A:
Residues: [1-221]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSICPLRNCL FLFIFLLSYQ QASSFSFEQC NVTRSCWFHP PECAADNLAA CQSGVEWQML  60
   61 PEGLFLQLEA KVHDLDQTRP FYAALGFSFN QRMDDDTVFE CVVPHTGDGK VQISFNDETF 120
  121 NQVLPQGSSV LLTEGTTSYV DGVLTCSAKL LLDNRPLIDN DTQFMVHDLE SGSYHLLFAR 180
  181 GSANKYTLEK DIHSTNDGQQ FPWMSDEQVS FCRTNCSSPN L

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.045757
Match: 1d7cA
Description: Cytochrome domain of cellobiose dehydrogenase
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [222-498]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YHIGEMRQTY NVSRYWRYRI AVWHGILLMF AWWVLASNAI LISRYFKPLF PRNKLLGTAV  60
   61 WFQLHRDMMI LSVVIQVICV LFIFYQAGWV WYQCSYMCTS DDFSKKMHGI TGFTATVLAL 120
  121 LQPVFGFLRP SPTSSIRPIF NWGHWLVGMF SWSVASATIV LALPMGKTGL NRLYGHVPNW 180
  181 IVLGYILFFI ACNLILEIIT ITSNKTKIEG IQPHRFTVGP MGMALANLNT PIKDAPIEVP 240
  241 KRTKARVTVV LVHLIVSLSV NIAFAVMLFH ALWSHSP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 7.045757
Match: 2fynA
Description: No description for 2fynA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle