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View Structure Prediction Details

Protein: srz-60
Organism: Caenorhabditis elegans
Length: 313 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for srz-60.

Description E-value Query
Range
Subject
Range
srz-66 - status:Partially_confirmed UniProt:Q9XV27 protein_id:CAB04367.1
204.0 [0..8] [309..33]

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Predicted Domain #1
Region A:
Residues: [1-313]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSIVRNNTD SVEYFIIFNG SNLITGIIIL IYFLLFPFYV YVNKANRKRD QAVLIYPFTK  60
   61 HFFKMTVVMS ILYVIFIAGM LSGVLFLVRK SPYIAVSGLA IFFAIQALSL VTHVFNLLLS 120
  121 LLGIAKFILY FFPSQEKRVS SIQKSVYRRI WLLYVACSFE DAILYVWVLR ENEMNIIKIG 180
  181 LLVSQTICIL ISALLYIPIL ISVRKLANLA SALENNPQKY IFWQTMTVFI FKLLYIPAIA 240
  241 FALLVSTFPS LYLTTSVRCV DIFTTPLIIQ ISYLLCNKRN VNTLLTSFNL KTFLKVLFNQ 300
  301 KTNSAVRPLH QIQ

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.04
Match: 1f88A
Description: Rhodopsin
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle