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View Structure Prediction Details

Protein: CE37181
Organism: Caenorhabditis elegans
Length: 555 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE37181.

Description E-value Query
Range
Subject
Range
gi|39584118, gi|... - gi|39584118|emb|CAE61493.1| Hypothetical protein CBG05390 [Caenorhabditis briggsae], gi|187034950|em...
gi|157756531 - gi|157756531|ref|XP_001670609.1| Hypothetical protein CBG05390 [Caenorhabditis briggsae AF16]
376.0 [0..1] [555..1]

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Predicted Domain #1
Region A:
Residues: [1-433]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFIKRLLFLF SAISVVSCLS RHPKLLLISF DGFRYDLLDE VLTPNIHKWA SMSTWFTSGV  60
   61 KSQYVTYTAP NHMSIATGLF EEEHGIVGNY FFDADTKKAF DYFNSTGKEG VVNASQESFW 120
  121 YNSDPIWLTN ERWESSRRSA AFYWPNGESQ FPYIPHKPKI ARPWTIVGDL KSWMKDADDV 180
  181 IDAFIREKEP VNFLAWYVAE PDHTLHGNGF HNKEIEKTLK KLDDLFLYFI KKFDDNNLGA 240
  241 DVNIILTADH GHAEIKDHKH VMCVKDYVSG AGFEMGDHMI YPHSDEIGKQ IYANLTSAVK 300
  301 EHGYDVNIHW REEVPERWHY RNSSRIGKIV FEPQIGSSIS FSCTKDLMEK QYGENGTLKF 360
  361 NSSTHGQDPD RPEMRAFLIM RGPAFSENYT IADIPSNVDL YNIMCHVLGI TPTENNGTME 420
  421 IVKRALKENR YLP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 46.0
Match: 2gsnA
Description: No description for 2gsnA was found.

Predicted Domain #2
Region A:
Residues: [434-555]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTHGFVFNQI TDSWSFSLIL IPSMCIVIIF FAYGCKNTVL KSDPNWGRSD TVQGYRPLSN  60
   61 RTNEGFELND DEDEDEGDGL RNSIDLERGG RRSQAGGGAL GSLNNGTVAM SGLLDEMSDD 120
  121 DI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle