YRC Public Data Repository - Protein Structure Prediction

Protein:	tag-342
Organism:	Caenorhabditis elegans
Length:	348 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tag-342.

Description	E-value	Query Range	Subject Range
gi\|39590835, gi\|... - gi\|39590835\|emb\|CAE65208.1\| Hypothetical protein CBG10083 [Caenorhabditis briggsae], gi\|187031529\|em... gi\|157774541 - gi\|157774541\|ref\|XP_001665336.1\| hypothetical protein CBG10083 [Caenorhabditis briggsae AF16]	615.0	[0..1]	[347..1]

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Predicted Domain #1

Region A:
Residues: [1-133]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPKRAVKKK VQTTEKARPT LDQEIKLDDS NELEPSIRSV VTSLMFTSGD DENPLSENED  60
   61 FVVNILKNEL VLFINDVIEV YDNKIPNVKL QHMLQLLNSQ KGVLSRFIKY LKNRVEMSAF 120
  121 MRAKSFSKNG TEN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [134-348]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ICGQEVENED ETTDEKIEEG VDPMDEIGEV GGEEGEYLKN KRRTYGTITS EENLLQEAQK  60
   61 SFFDAGLDFN TFENDVDENH NQQLIVLQTI LEDMNADEYS RFALARRVSF QNQSAVPVVY 120
  121 SDTFSKSNAR KRKRSPPTNN RQLLLQWLGN PPVHDESAQV FLAFLAKDII SEIVGNALLE 180
  181 RRKMNPAEGG PLSYSYYEEP LRRNRKFRKY GRILI