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View Structure Prediction Details

Protein: CE37075
Organism: Caenorhabditis elegans
Length: 710 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE37075.

Description E-value Query
Range
Subject
Range
CE23688 - status:Partially_confirmed UniProt:Q9U3H5 protein_id:CAA20934.2
413.0 [0..1] [710..1]

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Predicted Domain #1
Region A:
Residues: [1-192]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSDRCPKRP RKSETDYRSE EDSEKEDDKA NEEKPQWFPS LKRTSKEKRM EKLFTNEQSR  60
   61 SIFQFFLNII RNKGHIAKWP INFSDAAVWI RCRQFIGVQK DIECYRNHFK FALIKLHLIP 120
  121 YVTLQEKADL YFALDLHVDK SIRQELIDTY QVEINKYGYL TGCSNFEHWI PVLLQNSSAP 180
  181 KSRLSTAPHR RN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [193-318]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YTPFWEFEDG LMWKFVLDDI NSGIYRGKYL FDAWEVFKNM NARINRSSDT YETRFHRILL  60
   61 PNLHIMPFHV ATKAAIYQHL DERVPEDFWA VLQRETGVKL DDEGLIVEFS NRPLHFSLQS 120
  121 EPLDNI

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 4.148742
Match: PF04435.9
Description: No description for PF04435.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [319-404]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PEQPPIDNEP TLMNPITGIG PFTTEEDKMI WKFILVMLRG NNEITKRIKA NFRGFVIWKH  60
   61 FVKVLHSKRE WSSLRNQFHS ITTKLI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [405-710]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TKEGVIQYAV GSDFEFGQKE KGGHVSDEDY VPNNRQIPQQ TTSSRSLRNS AEKDVPHSDW  60
   61 FHKVNDSDSM REDADLSSNS VKYPYQPPPG NSSYQHRGLL RTLGFGLTRN DLPGPSPPIS 120
  121 TSRRSRGRPR KSAPEAHVAP ITEKLEELLP VENEPIEIKQ EIIDYDDVPV LETKPEKIPE 180
  181 IEAPYFPQES SSPAPNRSSV PYFPRISPST ESLNFVEKWE ETQESERLRR REWDFDEEID 240
  241 EEQNDIIDPR LDNAFQDIEE SIRQFNCRLK NVSRDLGDNQ HAACFDRVSA LTKMFRATTR 300
  301 DALARK

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.18
Match: 1h1kI
Description: THE BLUETONGUE VIRUS (BTV) CORE BINDS DSRNA
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle