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View Structure Prediction Details

Protein: BUD4
Organism: Saccharomyces cerevisiae
Length: 1448 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BUD4.

Description E-value Query
Range
Subject
Range
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
0.0 [129..1448] [1..1320]
BUD4 - Protein involved in bud-site selection and required for axial budding pattern; localizes with septin...
0.0 [1..1448] [1..1448]
mid2 - anillin homologue Mid2
MID2_SCHPO - Septin ring organizing protein mid2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mid2 P...
0.0 [761..1426] [65..699]
INT1_CANAL - Integrin alpha chain-like protein - Candida albicans (Yeast)
0.0 [1061..1423] [1299..1646]
gi|18026868 - gi|18026868|gb|AAL55661.1|AF237418_3 hypothetical protein [Schizosaccharomyces pombe]
2.0E-16 [761..827] [67..143]

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Predicted Domain #1
Region A:
Residues: [1-164]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHDAESTVDS LLKEIDNEME QTKSNITQNG SEDTPHNWKL PLQEIGDDTM EMLVKHNTRS  60
   61 NATENSRGRS PSKMSTISNE SLNLGLLRVN SELEESPAAV HQERIKNSVA NGALGHANSP 120
  121 KVLNNLKNMA QDIDKLARDE EKPVKLSSSP LKFTLKSTQP LLSY

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [165-760]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PESPIHRSSI EIETNYDDED EEEEDAYTCL TQSPQILHSP SRIPITNAVS INKLNLDFTL  60
   61 NPNESDKSLV SDTSVDSTGR ELDTKTIPEL PFCMSSTPEM TPVDEKCNLP SKLLNTSNNS 120
  121 HSDSRSANSL CGGFKHFNES SRVLIPAKII QSLLMRMRLL KTMLCRDLQQ NMEHIDEAFD 180
  181 EKKVLDEGCS NEPVTFLGEN DTRSIVYSNK GTNANVQEFS QEDSLAHSEP KFKDLNATSD 240
  241 DVWNEDKETD ANISTSTKSE ESYIADYKVT RQEDWDTKKL HQESEHANEQ PAIIPQKDSS 300
  301 EETFTELNNE SEFQRNFKDG EEYRIVQHEE SLYGQRTKSP EENIINGSEI GVDHGEAAEV 360
  361 NEPLAKTSAE EHDLSSSCED QSVSEARNKD RIEEKEVETK DENIETEKDE SEYHKVEENE 420
  421 EPEHVPLLPP LPRWEEIQFN EPFIDENDTS NDSIDLTRSM KPSDYISIWH IQEEEIKSNS 480
  481 PESIANSQFS QQSSITTAST VDSKKDNGST SFKFKPRIVS RSRIYNPKSR VSSLNYYDNE 540
  541 DYILSNSEWN ALDPMRRNTL ISKRIQDNIR TQKGHAPLIR PSIMKLNGED SGFQNH

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [761-879]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FLEVEQPQEH ENIPLSTHLS EQDITTNVGL DEQKLPTNTQ DEAEISIREI ESAGDITFNR  60
   61 GDLLSLSFDE ELGQDFANFL DALDHDSTSF NHGPDDSSSF QRDSSKKSFN SLWESSYEL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [880-1261]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KPPPSIRKQP IAPDVLQKLL ESDTKDDADL EKIREERITE PRTGLGIGML KTPVKDVSIA  60
   61 LAASIKGYEA SFSDTDSRPE GMNNSDAITL NMFDDFEEDK MTPSTPVRSI SPIKRHVSSP 120
  121 FKVVKAGNKQ ENNEINIKAE EEIEPMTQQE TDGLKQDIPP LLAQTKDNVE AKEETITQLE 180
  181 EPQDVEQEFP DMGTLYLSIK AISTLALYGT KSHRATYAIV FDNGENVVQT PWESLPYDGN 240
  241 IRINKEFELP IDFKGKAETS SASSERDSYK KCVITLKCKY EKPRHELVEI VDKVPVGKSF 300
  301 FGKTKYKFEK KYVQKKPKQD EWDYLFAQDG SFARCEIEIN EEFLKNVAFN TSHMHYNMIN 360
  361 KWSRIADKIH GSKRLYELPR KA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [1262-1448]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PHKVASLDVE ACFLERTSAF EQFPKQFSLV NKIVSKYKLQ QNIYKEGYLL QDGGDLKGKI  60
   61 ENRFFKLHGS QLSGYHEISR KAKIDINLLK VTKVLRNEDI QADNGGQRNF TDWVLFNECF 120
  121 QLVFDDGERI TFNAECSNEE KSDWYNKLQE VVELNVFHQP WVKKYCEKLA EEEKTRTTGH 180
  181 NLKQDFN

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 12.251812
Match: PF00169
Description: PH domain

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [760-840]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HFLEVEQPQE HENIPLSTHL SEQDITTNVG LDEQKLPTNT QDEAEISIRE IESAGDITFN  60
   61 RGDLLSLSFD EELGQDFANF L

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #7
Region A:
Residues: [841-1059]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DALDHDSTSF NHGPDDSSSF QRDSSKKSFN SLWESSYELK PPPSIRKQPI APDVLQKLLE  60
   61 SDTKDDADLE KIREERITEP RTGLGIGMLK TPVKDVSIAL AASIKGYEAS FSDTDSRPEG 120
  121 MNNSDAITLN MFDDFEEDKM TPSTPVRSIS PIKRHVSSPF KVVKAGNKQE NNEINIKAEE 180
  181 EIEPMTQQET DGLKQDIPPL LAQTKDNVEA KEETITQLE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #8
Region A:
Residues: [1060-1156]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EPQDVEQEFP DMGTLYLSIK AISTLALYGT KSHRATYAIV FDNGENVVQT PWESLPYDGN  60
   61 IRINKEFELP IDFKGKAETS SASSERDSYK KCVITLK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #9
Region A:
Residues: [1157-1257]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CKYEKPRHEL VEIVDKVPVG KSFFGKTKYK FEKKYVQKKP KQDEWDYLFA QDGSFARCEI  60
   61 EINEEFLKNV AFNTSHMHYN MINKWSRIAD KIHGSKRLYE L

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #10
Region A:
Residues: [1258-1448]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PRKAPHKVAS LDVEACFLER TSAFEQFPKQ FSLVNKIVSK YKLQQNIYKE GYLLQDGGDL  60
   61 KGKIENRFFK LHGSQLSGYH EISRKAKIDI NLLKVTKVLR NEDIQADNGG QRNFTDWVLF 120
  121 NECFQLVFDD GERITFNAEC SNEEKSDWYN KLQEVVELNV FHQPWVKKYC EKLAEEEKTR 180
  181 TTGHNLKQDF N

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.68
Match: 2dhiA
Description: No description for 2dhiA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle