YRC Public Data Repository - Protein Structure Prediction

Protein:	SKG1
Organism:	Saccharomyces cerevisiae
Length:	355 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SKG1.

Description	E-value	Query Range	Subject Range
gi\|45198818, gi\|... - gi\|45198818\|ref\|NP_985847.1\| AFR300Cp [Ashbya gossypii ATCC 10895], gi\|44984847\|gb\|AAS53671.1\| AFR30... SKG1_ASHGO - Suppressor of lethality of KEX2 GAS1 double null mutant protein 1 OS=Ashbya gossypii (strain ATCC 10...	374.0	[0..2]	[355..3]
SKG1 - Transmembrane protein with a role in cell wall polymer composition; localizes on the inner surface o...	365.0	[0..1]	[234..1]
SKG1_CANGA - Suppressor of lethality of KEX2 GAS1 double null mutant protein 1 OS=Candida glabrata (strain ATCC 2... gi\|49528195 - gi\|49528195\|emb\|CAG61852.1\| unnamed protein product [Candida glabrata]	237.0	[0..1]	[355..1]
gi\|49644714 - gi\|49644714\|emb\|CAG98286.1\| KLLA0F10934p [Kluyveromyces lactis] gi\|49644714, gi\|... - gi\|50311109\|ref\|XP_455578.1\| unnamed protein product [Kluyveromyces lactis], gi\|49644714\|emb\|CAG9828...	170.0	[0..3]	[355..4]
orf19.11307, orf... - orf19.3826 CGDID:CAL0001994 Assembly 19, Contig19-10192 (112769, 113617) CDS, translated using codon... gi\|68477518, gi\|... - gi\|68477518\|ref\|XP_717230.1\| hypothetical protein CaO19.3826 [Candida albicans SC5314], gi\|68477359\|...	149.0	[0..1]	[107..1]
gi\|50421819, gi\|... - gi\|50421819\|ref\|XP_459467.1\| hypothetical protein DEHA0E03949g [Debaryomyces hansenii CBS767], gi\|49...	74.0	[0..1]	[315..1]

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Predicted Domain #1

Region A:
Residues: [1-97]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTASTSVAVG CAVGIPVGVG IIIAVCFWFN LQKRYKREEQ DDRELERAIY DESGFVSFDN  60
   61 FGPLRDSKDE AALASSELKN PDHTSGSSEG SAHPEEK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [98-201]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DGKSRDQEKP LGKKNSKYYV PAYRRKINLL QVRNNNYGNN ARQKSVVDLP SINNSSNVSL  60
   61 SSSQRHITKR QISVYDQMVP VISDEGPNFF ADPSSDTNTS NDQN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [202-277]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KASMIELKHN TRQSSNENLI RNLQNQDFGS YYPRRASSSF LNGNISNASF HTRNSSITSV  60
   61 NKRDALEDVF ATPKSA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [278-355]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AQSQLPNTFD KDNEGMDADH SVKDSRSAIT DKDKDLYKLQ NNYDVGNIGE IAEEDQYENE  60
   61 FTNYSQSKRE FIESLRPK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits