| Protein: | VTC4 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 721 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VTC4.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..721] | [1..721] |
|
|
0.0 | [1..714] | [1..771] |
|
|
0.0 | [1..718] | [1..712] |
|
|
0.0 | [1..715] | [39..814] |
|
|
0.0 | [1..720] | [1..721] |
|
|
0.0 | [1..716] | [1..708] |
|
|
0.0 | [1..702] | [1..723] |
|
Region A: Residues: [1-188] |
1 11 21 31 41 51
| | | | | |
1 MKFGEHLSKS LIRQYSYYYI SYDDLKTELE DNLSKNNGQW TQELETDFLE SLEIELDKVY 60
61 TFCKVKHSEV FRRVKEVQEQ VQHTVRLLDS NNPPTQLDFE ILEEELSDII ADVHDLAKFS 120
121 RLNYTGFQKI IKKHDKKTGF ILKPVFQVRL DSKPFFKENY DELVVKISQL YDIARTSGRP 180
181 IKGDSSAG
|
| Detection Method: |  |
| Confidence: | 49.207608 |
| Match: | PF03105.7 |
| Description: | No description for PF03105.7 was found. |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [189-399] |
1 11 21 31 41 51
| | | | | |
1 GKQQNFVRQT TKYWVHPDNI TELKLIILKH LPVLVFNTNK EFEREDSAIT SIYFDNENLD 60
61 LYYGRLRKDE GAEAHRLRWY GGMSTDTIFV ERKTHREDWT GEKSVKARFA LKERHVNDFL 120
121 KGKYTVDQVF AKMRKEGKKP MNEIENLEAL ASEIQYVMLK KKLRPVVRSF YNRTAFQLPG 180
181 DARVRISLDT ELTMVREDNF DGVDRTHKNW R
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [400-596] |
1 11 21 31 41 51
| | | | | |
1 RTDIGVDWPF KQLDDKDICR FPYAVLEVKL QTQLGQEPPE WVRELVGSHL VEPVPKFSKF 60
61 IHGVATLLND KVDSIPFWLP QMDVDIRKPP LPTNIEITRP GRSDNEDNDF DEDDEDDAAL 120
121 VAAMTNAPGN SLDIEESVGY GATSAPTSNT NHVVESANAA YYQRKIRNAE NPISKKYYEI 180
181 VAFFDHYFNG DQISKIP
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [597-721] |
1 11 21 31 41 51
| | | | | |
1 KGTTFDTQIR APPGKTICVP VRVEPKVYFA TERTYLSWLS ISILLGGVST TLLTYGSPTA 60
61 MIGSIGFFIT SLAVLIRTVM VYAKRVVNIR LKRAVDYEDK IGPGMVSVFL ILSILFSFFC 120
121 NLVAK
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.892 | N/A | N/A | a.2.2 | Ribosomal protein L29 (L29p) |
| View | Download | 0.862 | N/A | N/A | a.2.2 | Ribosomal protein L29 (L29p) |
| View | Download | 0.842 | N/A | N/A | f.17.1 | F1F0 ATP synthase subunit C |
| View | Download | 0.817 | N/A | N/A | f.13.1 | Family A G protein-coupled receptor-like |
| View | Download | 0.794 | N/A | N/A | f.34.1 | Mechanosensitive channel protein MscS (YggB), transmembrane region |
