YRC Public Data Repository - Protein Structure Prediction

Protein:	FAT1
Organism:	Saccharomyces cerevisiae
Length:	669 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FAT1.

Description	E-value	Query Range	Subject Range
gi\|186682529, gi... - gi\|23129063\|ref\|ZP_00110897.1\| COG1020: Non-ribosomal peptide synthetase modules and related protein...	0.0	[2..668]	[1453..2112]
gi\|27817222 - gi\|27817222\|gb\|AAO23333.1\| NcpA [Nostoc sp. ATCC 53789]	0.0	[2..668]	[2550..3221]
gi\|6563397 - gi\|6563397\|gb\|AAF15891.2\|AF204805_1 NosA [Nostoc sp. GSV224]	0.0	[2..668]	[1447..2128]
gi\|17131741, gi\|... - gi\|17230140\|ref\|NP_486688.1\| peptide synthetase [Nostoc sp. PCC 7120], gi\|17131741\|dbj\|BAB74347.1\| p... gi\|25294032 - pir\|\|AI2136 peptide synthetase [imported] - Nostoc sp. (strain PCC 7120)	0.0	[4..668]	[395..1014]
gi\|28804618 - gi\|28804618\|dbj\|BAC57997.1\| microcystin synthetase [Microcystis viridis NIES-102] gi\|28804618 - gi\|28804618\|dbj\|BAC57997.1\| microcystin synthetase [Microcystis viridis]	0.0	[20..668]	[2..594]
gi\|9715733 - gi\|9715733\|emb\|CAC01603.1\| peptide synthetase [Anabaena circinalis 90]	0.0	[2..668]	[1531..2200]
gi\|24744799 - gi\|24744799\|emb\|CAD29799.1\| microcystin synthetase [Planktothrix agardhii NIVA-CYA 126/8] gi\|24744799 - gi\|24744799\|emb\|CAD29799.1\| microcystin synthetase [Planktothrix agardhii]	0.0	[15..667]	[420..1019]
gi\|45508138 - ref\|ZP_00160478.1\| COG1020: Non-ribosomal peptide synthetase modules and related proteins [Anabaena ...	0.0	[13..668]	[447..1046]
gi\|899317 - gi\|899317\|emb\|CAA82192.1\| peptide synthetase module [Microcystis aeruginosa]	0.0	[12..668]	[4..604]

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Predicted Domain #1

Region A:
Residues: [1-669]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPIQVVVFA LSRIFLLLFR LIKLIITPIQ KSLGYLFGNY FDELDRKYRY KEDWYIIPYF  60
   61 LKSVFCYIID VRRHRFQNWY LFIKQVQQNG DHLAISYTRP MAEKGEFQLE TFTYIETYNI 120
  121 VLRLSHILHF DYNVQAGDYV AIDCTNKPLF VFLWLSLWNI GAIPAFLNYN TKGTPLVHSL 180
  181 KISNITQVFI DPDASNPIRE SEEEIKNALP DVKLNYLEEQ DLMHELLNSQ SPEFLQQDNV 240
  241 RTPLGLTDFK PSMLIYTSGT TGLPKSAIMS WRKSSVGCQV FGHVLHMTNE STVFTAMPLF 300
  301 HSTAALLGAC AILSHGGCLA LSHKFSASTF WKQVYLTGAT HIQYVGEVCR YLLHTPISKY 360
  361 EKMHKVKVAY GNGLRPDIWQ DFRKRFNIEV IGEFYAATEA PFATTTFQKG DFGIGACRNY 420
  421 GTIIQWFLSF QQTLVRMDPN DDSVIYRNSK GFCEVAPVGE PGEMLMRIFF PKKPETSFQG 480
  481 YLGNAKETKS KVVRDVFRRG DAWYRCGDLL KADEYGLWYF LDRMGDTFRW KSENVSTTEV 540
  541 EDQLTASNKE QYAQVLVVGI KVPKYEGRAG FAVIKLTDNS LDITAKTKLL NDSLSRLNLP 600
  601 SYAMPLFVKF VDEIKMTDNH KILKKVYREQ KLPKGLDGND TIFWLKNYKR YEVLTAADWE 660
  661 AIDAQTIKL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	118.0
Match:	1pg3A_
Description:	Acetyl-CoA synthetase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits