YRC Public Data Repository - Protein Structure Prediction

Protein:	SUS1
Organism:	Saccharomyces cerevisiae
Length:	96 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SUS1.

Description	E-value	Query Range	Subject Range
gi\|50731850 - gi\|50731850\|ref\|XP_418387.1\| PREDICTED: similar to e(y)2 protein; DC6 protein; e(y)2 homolog; enhanc...	136.0	[0..6]	[91..234]
gi\|109087263 - gi\|109087263\|ref\|XP_001087516.1\| PREDICTED: similar to e(y)2 protein [Macaca mulatta]	125.0	[0..6]	[91..60]
gi\|114621341 - gi\|114621341\|ref\|XP_001135431.1\| PREDICTED: similar to DC6 [Pan troglodytes]	120.0	[0..6]	[91..38]
SUS1_ARATH - Transcription and mRNA export factor SUS1 OS=Arabidopsis thaliana GN=SUS1 PE=3 SV=1	116.0	[0..4]	[89..23]
ENY2_MOUSE - Transcription and mRNA export factor ENY2 OS=Mus musculus GN=Eny2 PE=1 SV=1 gi\|149721612 - gi\|149721612\|ref\|XP_001495477.1\| PREDICTED: similar to mCG145920 isoform 1 [Equus caballus] gi\|109482159, gi... - gi\|194474074\|ref\|NP_001124052.1\| enhancer of yellow 2 homolog [Rattus norvegicus], gi\|149066438\|gb\|E... ENSMMUT000000085... - null, null ENSCJAT00000012432 - null ENY2 - enhancer of yellow 2 homolog (Drosophila) gi\|57095302, gi\|... - gi\|73974326\|ref\|XP_860311.1\| PREDICTED: similar to e(y)2 protein isoform 5 [Canis familiaris], gi\|73... tr\|M3XCF2\|M3XCF2... - Transcription and mRNA export factor ENY2 OS=Felis catus GN=ENY2 PE=3 SV=1 ENSPTRT00000037945 - null ENY2_BOVIN - Transcription and mRNA export factor ENY2 OS=Bos taurus GN=ENY2 PE=3 SV=1 gi\|194035670, gi... - gi\|194035676\|ref\|XP_001926701.1\| PREDICTED: similar to mCG145920 [Sus scrofa], gi\|194035670\|ref\|XP_0...	115.0	[0..6]	[91..10]
ENY2_XENLA - Transcription and mRNA export factor ENY2 OS=Xenopus laevis GN=eny2 PE=3 SV=1	115.0	[0..6]	[91..5]
SUS1_ASHGO - Transcription and mRNA export factor SUS1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC ... SUS1_ASHGO - Protein SUS1 OS=Ashbya gossypii GN=SUS1 PE=3 SV=1	114.0	[0..4]	[96..7]
sus1 - SAGA complex subunit Sus1 SUS1_SCHPO - Transcription and mRNA export factor sus1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=...	111.0	[0..1]	[87..4]
gi\|47207340 - gi\|47207340\|emb\|CAF92801.1\| unnamed protein product [Tetraodon nigroviridis]	110.0	[0..6]	[91..5]
ENY2_DANRE - Transcription and mRNA export factor ENY2 OS=Danio rerio GN=eny2 PE=3 SV=1	109.0	[0..7]	[91..6]

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Predicted Domain #1

Region A:
Residues: [1-96]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTMDTAQLKS QIQQYLVESG NYELISNELK ARLLQEGWVD KVKDLTKSEM NINESTNFTQ  60
   61 ILSTVEPKAL EMVSDSTRET VLKQIREFLE EIVDTQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.940	d.56.1	GroEL-intermediate domain like
View	Download	0.898	a.118.11	Cytochrome c oxidase subunit E
View	Download	0.893	a.152.1	Antioxidant defence protein AhpD
View	Download	0.885	a.24.13	Domain of the SRP/SRP receptor G-proteins
View	Download	0.832	a.60.15	Description not found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits