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View Structure Prediction Details

Protein: SCS22
Organism: Saccharomyces cerevisiae
Length: 175 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SCS22.

Description E-value Query
Range
Subject
Range
VAP11_ARATH - Vesicle-associated protein 1-1 OS=Arabidopsis thaliana GN=PVA11 PE=1 SV=1
154.0 [0..1] [152..23]

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Predicted Domain #1
Region A:
Residues: [1-175]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIVPEKLVF KAPLNKQSTE YIKLENDGEK RVIFKVRTSA PTKYCVRPNV AIIGAHESVN  60
   61 VQIVFLGLPK STADDEMDQK RDKFLIVTLP IPAAYQNVED GELLSDWPNL EEQYKDDIVF 120
  121 KKIKIFHSVL PKRKPSGNHD AESARAPSAG NGQSLSSRAL LIITVIALLV GWIYY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 30.0
Match: 1grwA
Description: Major sperm protein, MSP
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.140036434994777 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle