YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: VMA9
Organism: Saccharomyces cerevisiae
Length: 73 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VMA9.

Description E-value Query
Range		 Subject
Range
gi|151943816 - gi|151943816|gb|EDN62116.1| V-ATPase V0 sector subunit e [Saccharomyces cerevisiae YJM789]
gi|190406432 - gi|190406432|gb|EDV09699.1| vacuolar ATP synthase subunit e [Saccharomyces cerevisiae RM11-1a]
VA0E_YEAST - V-type proton ATPase subunit e OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VMA9 PE=1...
VMA9 - Vacuolar H+ ATPase subunit e of the V-ATPase V0 subcomplex; essential for vacuolar acidification; in...
 5.0E-22 [1..73] [1..73]
VA0E_ASHGO - V-type proton ATPase subunit e OS=Ashbya gossypii GN=VMA9 PE=3 SV=1
VA0E_ASHGO - V-type proton ATPase subunit e OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL...
 7.0E-20 [3..73] [2..72]

Back

Predicted Domain #1
Region A:
Residues: [1-73] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSFYTVVGV FIVVSAMSVL FWIMAPKNNQ AVWRSTVILT LAMMFLMWAI TFLCQLHPLV  60
   61 APRRSDLRPE FAE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle