YRC Public Data Repository - Protein Structure Prediction

Protein:	ABP140
Organism:	Saccharomyces cerevisiae
Length:	279 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ABP140.

Description	E-value	Query Range	Subject Range
SPCC737.08 - midasin MDN1_SCHPO - Midasin OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mdn1 PE=1 SV=1	2.0E-50	[6..268]	[4016..4282]
gi\|11863542 - gi\|11863542\|emb\|CAC18800.1\| AKAP550 [Drosophila melanogaster]	3.0E-35	[4..265]	[1046..1347]
MDN1 - Huge dynein-related AAA-type ATPase (midasin), forms extended pre-60S particle with the Rix1 complex... MDN1_YEAST - Midasin OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MDN1 PE=1 SV=1	1.0E-30	[4..275]	[4180..4439]
gi\|25403219, gi\|... - pir\|\|G86471 unknown protein [imported] - Arabidopsis thaliana, gi\|15219498\|ref\|NP_174745.1\| Ulp1 pr...	3.0E-29	[6..256]	[607..881]
dpy-22 - status:Partially_confirmed UniProt:Q20497 protein_id:CAA90064.1	1.0E-28	[31..263]	[541..786]
NCKX1_RAT - Sodium/potassium/calcium exchanger 1 OS=Rattus norvegicus GN=Slc24a1 PE=2 SV=1	8.0E-28	[23..276]	[647..931]

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Predicted Domain #1

Region A:
Residues: [1-72]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVADLIKKF ESISKEEGDA TVDTNSSSKP LKSNDETKEL HQQESTAVPQ EVDVNEEFEN  60
   61 EPETINSSRT AE

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	9.63
Match:	1l8mA
Description:	No description for 1l8mA was found.

Predicted Domain #2

Region A:
Residues: [73-151]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KPLETNLPKP ETNEEDEEEG SMSENKIYSK GENADINVND FQEYKEMENT GAEVLASSVE  60
   61 ESDAIQEGVA EETEGIATP

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	9.63
Match:	1l8mA
Description:	No description for 1l8mA was found.

Predicted Domain #3

Region A:
Residues: [152-221]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KQKENEKNDE SEEESANNAS EPAEEYSQSE EDADIEQSNG KETENAENAS QQANDGSTST  60
   61 TTSKNKKKKN

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	9.63
Match:	1l8mA
Description:	No description for 1l8mA was found.

Predicted Domain #4

Region A:
Residues: [222-279]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KKKNKKKRNG NVNTNANVDD STKTGENDDT TGDTTSSTTS AIQEVNDLEV VDDSCLRH

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	9.63
Match:	1l8mA
Description:	No description for 1l8mA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits