YRC Public Data Repository - Protein Structure Prediction

Protein:	RUB1
Organism:	Saccharomyces cerevisiae
Length:	77 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RUB1.

Description	E-value	Query Range	Subject Range
gi\|5523975 - gi\|5523975\|gb\|AAD44040.1\|AF104023_1 polyprotein [Bovine viral diarrhea virus genotype 2]	7.0E-37	[1..76]	[177..252]
gi\|11528469 - gi\|11528469\|gb\|AAG37291.1\| humanized L1/ubiqutin hybrid protein [synthetic construct]	2.0E-36	[1..75]	[1..75]
gi\|567767 - gi\|567767\|gb\|AAA53067.1\| p125 protein	2.0E-35	[1..76]	[423..498]
gi\|41055516, gi\|... - gi\|41055516\|ref\|NP_956796.1\| ribosomal protein S27a [Danio rerio], gi\|33585739\|gb\|AAH55524.1\| Zgc:66... gi\|221219368 - gi\|221219368\|gb\|ACM08345.1\| Ubiquitin [Salmo salar] gi\|167860808 - gi\|167860808\|gb\|ACA05172.1\| ribosomal protein S27a [Oncorhynchus masou formosanus] RS27A_ICTPU - Ubiquitin-40S ribosomal protein S27a OS=Ictalurus punctatus GN=rps27a PE=2 SV=2 gi\|124300843 - gi\|124300843\|dbj\|BAF45917.1\| ribosomal protein S27a [Solea senegalensis] gi\|229366594 - gi\|229366594\|gb\|ACQ58277.1\| Ubiquitin [Anoplopoma fimbria] gi\|225707998 - gi\|225707998\|gb\|ACO09845.1\| Ubiquitin [Osmerus mordax]	3.0E-35	[1..76]	[1..76]

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Predicted Domain #1

Region A:
Residues: [1-77]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVKVKTLTG KEISVELKES DLVYHIKELL EEKEGIPPSQ QRLIFQGKHS DDKLTVTDAH  60
   61 LVEGMQLHLV LTLRGGN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	185.69897
Match:	1nddA_
Description:	Nedd8
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits