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View Structure Prediction Details

Protein: AB33G_ARATH
Organism: Arabidopsis thaliana
Length: 1413 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for AB33G_ARATH.

Predicted Domain #1
Region A:
Residues: [1-100]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSSFRSSSS RNEHEDGGDE AEHALQWAEI QRLPTFKRLR SSLVDKYGEG TEKGKKVVDV  60
   61 TKLGAMERHL MIEKLIKHIE NDNLKLLKKI RRRMERVGVE 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [101-409]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FPSIEVRYEH LGVEAACEVV EGKALPTLWN SLKHVFLDLL KLSGVRTNEA NIKILTDVSG  60
   61 IISPGRLTLL LGPPGCGKTT LLKALSGNLE NNLKCYGEIS YNGHGLNEVV PQKTSAYISQ 120
  121 HDLHIAEMTT RETIDFSARC QGVGSRTDIM MEVSKREKDG GIIPDPEIDA YMKAISVKGL 180
  181 KRSLQTDYIL KILGLDICAE TLVGNAMKRG ISGGQKKRLT TAEMIVGPTK ALFMDEITNG 240
  241 LDSSTAFQII KSLQQVAHIT NATVFVSLLQ PAPESYDLFD DIVLMAEGKI VYHGPRDDVL 300
  301 KFFEECGFQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 34.39794
Match: 2bbsA
Description: Human deltaF508 NBD1 with three solubilizing mutations
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [410-486]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CPERKGVADF LQEVISKKDQ GQYWLHQNLP HSFVSVDTLS KRFKDLEIGR KIEEALSKPY  60
   61 DISKTHKDAL SFNVYSL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [487-1069]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PKWELFRACI SREFLLMKRN YFVYLFKTFQ LVLAAIITMT VFIRTRMDID IIHGNSYMSC  60
   61 LFFATVVLLV DGIPELSMTV QRLSVFYKQK QLCFYPAWAY AIPATVLKIP LSFFESLVWT 120
  121 CLTYYVIGYT PEPYRFFRQF MILFAVHFTS ISMFRCIAAI FQTGVAAMTA GSFVMLITFV 180
  181 FAGFAIPYTD MPGWLKWGFW VNPISYAEIG LSVNEFLAPR WQKMQPTNVT LGRTILESRG 240
  241 LNYDDYMYWV SLSALLGLTI IFNTIFTLAL SFLKSPTSSR PMISQDKLSE LQGTKDSSVK 300
  301 KNKPLDSSIK TNEDPGKMIL PFKPLTITFQ DLNYYVDVPV EMKGQGYNEK KLQLLSEITG 360
  361 AFRPGVLTAL MGISGAGKTT LLDVLAGRKT SGYIEGEIRI SGFLKVQETF ARVSGYCEQT 420
  421 DIHSPSITVE ESLIYSAWLR LVPEINPQTK IRFVKQVLET IELEEIKDAL VGVAGVSGLS 480
  481 TEQRKRLTVA VELVANPSII FMDEPTTGLD ARAAAIVMRA VKNVAETGRT IVCTIHQPSI 540
  541 HIFEAFDELV LLKRGGRMIY SGPLGQHSSC VIEYFQNIPG VAK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 90.30103
Match: 2hydA
Description: No description for 2hydA was found.

Predicted Domain #5
Region A:
Residues: [1070-1147]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IRDKYNPATW MLEVTSESVE TELDMDFAKI YNESDLYKNN SELVKELSKP DHGSSDLHFK  60
   61 RTFAQNWWEQ FKSCLWKM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 73.30103
Match: 2yyzA
Description: No description for 2yyzA was found.

Predicted Domain #6
Region A:
Residues: [1148-1322]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SLSYWRSPSY NLMRIGHTFI SSFIFGLLFW NQGKKIDTQQ NLFTVLGAIY GLVLFVGINN  60
   61 CTSALQYFET ERNVMYRERF AGMYSAFAYA LAQVVTEIPY IFIQSAEFVI VIYPMIGFYA 120
  121 SFSKVFWSLY AMFCNLLCFN YLAMFLISIT PNFMVAAILQ SLFFTTFNIF AGFLI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #7
Region A:
Residues: [1323-1413]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PKPQIPKWWV WFYYITPTSW TLNLFFSSQY GDIHQKINAF GETKTVASFL EDYFGFHHDR  60
   61 LMITAIILIA FPIALATMYA FFVAKLNFQK R

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle