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View Structure Prediction Details

Protein: AB36G_ARATH
Organism: Arabidopsis thaliana
Length: 1469 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for AB36G_ARATH.

Predicted Domain #1
Region A:
Residues: [1-441]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDYNPNLPPL GGGGVSMRRS ISRSVSRASR NIEDIFSSGS RRTQSVNDDE EALKWAAIEK  60
   61 LPTYSRLRTT LMNAVVEDDV YGNQLMSKEV DVTKLDGEDR QKFIDMVFKV AEQDNERILT 120
  121 KLRNRIDRVG IKLPTVEVRY EHLTIKADCY TGNRSLPTLL NVVRNMGESA LGMIGIQFAK 180
  181 KAQLTILKDI SGVIKPGRMT LLLGPPSSGK TTLLLALAGK LDKSLQVSGD ITYNGYQLDE 240
  241 FVPRKTSAYI SQNDLHVGIM TVKETLDFSA RCQGVGTRYD LLNELARREK DAGIFPEADV 300
  301 DLFMKASAAQ GVKNSLVTDY TLKILGLDIC KDTIVGDDMM RGISGGQKKR VTTGEMIVGP 360
  361 TKTLFMDEIS TGLDSSTTFQ IVKCLQQIVH LNEATVLMSL LQPAPETFDL FDDIILVSEG 420
  421 QIVYQGPRDN ILEFFESFGF K

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 28.69897
Match: 3bk7A
Description: No description for 3bk7A was found.

Predicted Domain #2
Region A:
Residues: [442-515]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CPERKGTADF LQEVTSKKDQ EQYWVNPNRP YHYIPVSEFA SRYKSFHVGT KMSNELAVPF  60
   61 DKSRGHKAAL VFDK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [516-1120]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YSVSKRELLK SCWDKEWLLM QRNAFFYVFK TVQIVIIAAI TSTLFLRTEM NTRNEGDANL  60
   61 YIGALLFGMI INMFNGFAEM AMMVSRLPVF YKQRDLLFYP SWTFSLPTFL LGIPSSILES 120
  121 TAWMVVTYYS IGFAPDASRF FKQFLLVFLI QQMAASLFRL IASVCRTMMI ANTGGALTLL 180
  181 LVFLLGGFLL PKGKIPDWWG WAYWVSPLTY AFNGLVVNEM FAPRWMNKMA SSNSTIKLGT 240
  241 MVLNTWDVYH QKNWYWISVG ALLCFTALFN ILFTLALTYL NPLGKKAGLL PEEENEDADQ 300
  301 GKDPMRRSLS TADGNRRGEV AMGRMSRDSA AEASGGAGNK KGMVLPFTPL AMSFDDVKYF 360
  361 VDMPGEMRDQ GVTETRLQLL KGVTGAFRPG VLTALMGVSG AGKTTLMDVL AGRKTGGYIE 420
  421 GDVRISGFPK VQETFARISG YCEQTDIHSP QVTVRESLIF SAFLRLPKEV GKDEKMMFVD 480
  481 QVMELVELDS LRDSIVGLPG VTGLSTEQRK RLTIAVELVA NPSIIFMDEP TSGLDARAAA 540
  541 IVMRAVRNTV DTGRTVVCTI HQPSIDIFEA FDELMLMKRG GQVIYAGPLG QNSHKVVEYF 600
  601 ESFPG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 88.154902
Match: 2hydA
Description: No description for 2hydA was found.

Predicted Domain #4
Region A:
Residues: [1121-1187]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VSKIPEKYNP ATWMLEASSL AAELKLSVDF AELYNQSALH QRNKALVKEL SVPPAGASDL  60
   61 YFATQFS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [1188-1469]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QNTWGQFKSC LWKQWWTYWR SPDYNLVRFI FTLATSLLIG TVFWQIGGNR SNAGDLTMVI  60
   61 GALYAAIIFV GINNCSTVQP MVAVERTVFY RERAAGMYSA MPYAISQVTC ELPYVLIQTV 120
  121 YYSLIVYAMV GFEWKAEKFF WFVFVSYFSF LYWTYYGMMT VSLTPNQQVA SIFASAFYGI 180
  181 FNLFSGFFIP RPKIPKWWIW YYWICPVAWT VYGLIVSQYG DVETRIQVLG GAPDLTVKQY 240
  241 IEDHYGFQSD FMGPVAAVLI AFTVFFAFIF AFCIRTLNFQ TR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle