YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|145360022, gi...
Organism:	Arabidopsis thaliana
Length:	276 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|145360022, gi....

Description	E-value	Query Range	Subject Range
gi\|31322576 - gi\|31322576\|gb\|AAP35053.1\| NAC-domain protein 5-11 [Brassica napus]	259.0	[0..1]	[275..1]
NAC2_ARATH - NAC domain-containing protein 2 OS=Arabidopsis thaliana GN=NAC002 PE=2 SV=2	252.0	[0..4]	[275..5]
gi\|14485513 - gi\|14485513\|emb\|CAC42087.1\| putative NAC domain protein [Solanum tuberosum]	252.0	[0..3]	[276..10]
gi\|82400207, gi\|... - gi\|82400211\|gb\|ABB72844.1\| NAC protein 1 splice variant 2 [Elaeis guineensis], gi\|82400207\|gb\|ABB728...	252.0	[0..2]	[271..10]
gi\|21105748 - gi\|21105748\|gb\|AAM34773.1\|AF509873_1 nam-like protein 10 [Petunia x hybrida]	250.0	[0..2]	[275..4]
gi\|66394512, gi\|... - gi\|66394512\|gb\|AAY46122.1\| NAC domain protein NAC2 [Glycine max], gi\|62546185\|gb\|AAX85979.1\| NAC2 pr...	250.0	[0..1]	[276..1]
gi\|6730938 - gi\|6730938\|dbj\|BAA89798.1\| OsNAC4 protein [Oryza sativa] gi\|15528779, gi\|... - gi\|56785066\|dbj\|BAD82705.1\| OsNAC4 protein [Oryza sativa Japonica Group], gi\|15528779\|dbj\|BAB64820.1...	250.0	[0..2]	[274..15]
NAC68_ORYSJ - NAC domain-containing protein 68 OS=Oryza sativa subsp. japonica GN=NAC68 PE=2 SV=1 NAC68_ORYSA - NAC domain-containing protein 68 (ONAC068) - Oryza sativa (Rice)	250.0	[0..2]	[274..17]

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Predicted Domain #1

Region A:
Residues: [1-162]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKDIELPGF RFHPTEEELL DFYLKNMVYG KRSSVEVIGF LNIYRHDPWD LPGLSRIGER  60
   61 EWYFFVPRER KHGNGGRPSR TTEKGYWKAT GSDRKIISLS EPKRVIGLKK TLVFYRGRAP 120
  121 GGSKTDWVMN EFRMPDNCSL PKDVVLCKIY RKATSLKVLE QR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	61.0
Match:	1ut4A
Description:	Structure of the conserved domain of ANAC, a member of the NAC family of transcription factors
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [163-276]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AEMEAKMNQT CPNSPLSSSE TISFVGKEEN MMTSFRAPQV IAMEEANKIQ MHQENAKTEE  60
   61 KQREAETKEP SSSLKLPFGS LPELQLPKPG VEWDQLLSIS PWLQNLTPIV NIYW

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits