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View Structure Prediction Details

Protein: PROT2_ARATH
Organism: Arabidopsis thaliana
Length: 439 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PROT2_ARATH.

Description E-value Query
Range
Subject
Range
gi|91084137 - gi|91084137|ref|XP_969912.1| PREDICTED: similar to CG8475-PA, isoform A [Tribolium castaneum]
207.0 [0..11] [391..2461]

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Predicted Domain #1
Region A:
Residues: [1-439]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTSEARNRK VVAVEQFDLE VPETAHQISS DSWFQVAFVL TTGINSAYVL GYSGTVMVPL  60
   61 GWIGGVVGLI LATAISLYAN TLIAKLHEFG GKRHIRYRDL AGFIYGKKMY RVTWGLQYVN 120
  121 LFMINCGFII LAGSALKAVY VLFRDDSLMK LPHFIAIAGV VCAIFAIGIP HLSALGIWLG 180
  181 VSTILSIIYI IVAIVLSAKD GVNKPERDYN IQGSSINKLF TITGAAANLV FAFNTGMLPE 240
  241 IQATVKQPVV KNMMKALYFQ FTVGVLPMYA VTFIGYWAYG SSTSTYLLNS VSGPVWVKAL 300
  301 ANISAFLQSV ISLHIFASPT YEYMDTKYGV KGSPLAMKNL LFRTVARGSY IAVSTLLSAL 360
  361 LPFLGDFMSL TGAISTFPLT FILANHMYLV AMNDELSLVQ KLWHWLNVCF FGLMSLAAAI 420
  421 AAVRLISVDS KNFHVFADV

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.31
Match: 2a65A
Description: Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle