YRC Public Data Repository - Protein Structure Prediction

Protein:	MGDG1_ARATH
Organism:	Arabidopsis thaliana
Length:	533 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MGDG1_ARATH.

Description	E-value	Query Range	Subject Range
MGDG_SPIOL - Monogalactosyldiacylglycerol synthase, chloroplastic OS=Spinacia oleracea GN=MGD A PE=1 SV=1	327.0	[0..1]	[533..1]
MGDG_TOBAC - Probable monogalactosyldiacylglycerol synthase, chloroplastic OS=Nicotiana tabacum GN=MGD A PE=2 SV=...	325.0	[0..1]	[532..2]
gi\|30689152 - gi\|30689152\|ref\|NP_849482.1\| MGD1 (MONOGALACTOSYL DIACYLGLYCEROL SYNTHASE 1); 1,2-diacylglycerol 3-b...	320.0	[0..1]	[448..1]
MGDG_CUCSA - Monogalactosyldiacylglycerol synthase, chloroplastic OS=Cucumis sativus PE=1 SV=1	304.0	[0..1]	[530..1]
MGDG_SOYBN - Probable monogalactosyldiacylglycerol synthase, chloroplastic OS=Glycine max GN=MGD A PE=2 SV=1	294.0	[0..8]	[533..5]
gi\|76800636 - gi\|76800636\|gb\|ABA55725.1\| monogalactosyldiacylglycerol synthase type A [Vigna unguiculata]	271.0	[0..8]	[533..5]
MGDG1_ORYSJ - Probable monogalactosyldiacylglycerol synthase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=M...	236.0	[0..70]	[533..67]
gi\|147920342, gi... - gi\|147920342\|ref\|YP_685885.1\| glycosyltransferase (group 1) [uncultured methanogenic archaeon RC-I],...	236.0	[0..142]	[531..1]
gi\|52080754, gi\|... - gi\|52080754\|ref\|YP_079545.1\| glycosyl transferase, family 4 [Bacillus licheniformis ATCC 14580], gi\|...	230.0	[0..140]	[523..2]

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Predicted Domain #1

Region A:
Residues: [1-141]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQNPSTVTQE SAAPVFDFFP RLRGLTSRNR SPCSNSDGYA LSSSNALYFN GFRTLPSRRM  60
   61 GKTLASLSFN TKSSAGSSLR RFISDFNSFI RFHCDKVVPE SFASVGGVGL SSDENGIREN 120
  121 GTGGVLGEEG LPLNGVEADR P

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [142-533]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KKVLILMSDT GGGHRASAEA IRAAFNQEFG DEYQVFITDL WTDHTPWPFN QLPRSYNFLV  60
   61 KHGTLWKMTY YGTSPRIVHQ SNFAATSTFI AREIAQGLMK YQPDIIISVH PLMQHVPLRV 120
  121 LRSKGLLKKI VFTTVITDLS TCHPTWFHKL VTRCYCPSTE VAKRAQKAGL ETSQIKVYGL 180
  181 PVRPSFVKPV RPKVELRREL GMDENLPAVL LMGGGEGMGP IEATARALAD ALYDKNLGEA 240
  241 VGQVLIICGR NKKLQSKLSS LDWKIPVQVK GFITKMEECM GACDCIITKA GPGTIAEAMI 300
  301 RGLPIILNGY IAGQEAGNVP YVVENGCGKF SKSPKEISKI VADWFGPASK ELEIMSQNAL 360
  361 RLAKPEAVFK IVHDMHELVR KKNSLPQLSC TA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.30103
Match:	1f0kA
Description:	Peptidoglycan biosynthesys glycosyltransferase MurG
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits