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View Structure Prediction Details

Protein: RLF1_ARATH
Organism: Arabidopsis thaliana
Length: 120 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RLF1_ARATH.

Description E-value Query
Range
Subject
Range
gi|42374767 - gi|42374767|gb|AAS13437.1| rapid alkalinization factor preproprotein [Nicotiana attenuata]
150.0 [0..13] [120..7]

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Predicted Domain #1
Region A:
Residues: [1-120]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKSFTLFLT LTILVVFIIS SPPVQAGFAN DLGGVAWATT GDNGSGCHGS IAECIGAEEE  60
   61 EMDSEINRRI LATTKYISYQ SLKRNSVPCS RRGASYYNCQ NGAQANPYSR GCSKIARCRS 120
  121 

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 36.886057
Match: PF05498.2
Description: No description for PF05498.2 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.234 N/A N/A a.24.13 Domain of the SRP/SRP receptor G-proteins
View Download 0.227 N/A N/A d.58.17 Metal-binding domain
View Download 0.208 N/A N/A a.64.1 Saposin
View Download 0.200 N/A N/A a.24.13 Domain of the SRP/SRP receptor G-proteins


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle