YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|21555160, gi\|...
Organism:	Arabidopsis thaliana
Length:	403 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|21555160, gi|....

Description	E-value	Query Range	Subject Range
gi\|92875375 - gi\|92875375\|gb\|ABE83368.1\| Protein of unknown function DUF829, eukaryotic [Medicago truncatula]	283.0	[0..3]	[403..9]
gi\|18397898, gi\|... - gi\|56790196\|gb\|AAW30015.1\| At2g15695 [Arabidopsis thaliana], gi\|54606848\|gb\|AAV34772.1\| At2g15695 [A...	256.0	[0..5]	[403..4]
gi\|51091926, gi\|... - gi\|51091926\|dbj\|BAD35195.1\| unknown protein [Oryza sativa Japonica Group], gi\|215701091\|dbj\|BAG92515...	250.0	[0..1]	[403..1]
gi\|78066438, gi\|... - gi\|78066438\|ref\|YP_369207.1\| Alpha/beta hydrolase [Burkholderia sp. 383], gi\|77967183\|gb\|ABB08563.1\|...	182.0	[0..4]	[265..8]
gi\|19914821, gi\|... - gi\|20089870\|ref\|NP_615945.1\| chloride peroxidase [Methanosarcina acetivorans C2A], gi\|19914821\|gb\|AA...	179.0	[0..4]	[265..8]
PRXC_PSEFL - Non-heme chloroperoxidase OS=Pseudomonas fluorescens GN=cpo PE=1 SV=3	177.0	[0..4]	[265..8]
gi\|68529012, gi\|... - gi\|94314231\|ref\|YP_587440.1\| alpha/beta hydrolase fold [Ralstonia metallidurans CH34], gi\|93358083\|g...	177.0	[0..4]	[266..8]
gi\|63258412, gi\|... - gi\|66047705\|ref\|YP_237546.1\| Alpha/beta hydrolase fold [Pseudomonas syringae pv. syringae B728a], gi...	177.0	[0..4]	[265..8]

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Predicted Domain #1

Region A:
Residues: [1-273]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWGIGGNYYW RKKNNNGGES EAIVVVFAWM SSEERNLKNH VDLYSSLLWD SLVCHSQFLN  60
   61 MFLPDKAADL ASNVVSELVK ELKAKPVPLV FASFSGGPNA CMYKVLQILE GTCETGLNPD 120
  121 DCRLVRNCIS GFIYDSCPVD FTSDLGARLA VHPTTLKMSS PPKPFVWAAN GIASSLDYVF 180
  181 LNRFESQRAE YWQTLYSTII MRVPYLILCS ENDDLAPYQT IHNFATRLQE LGGNVKLVKW 240
  241 NDSPHCGHYR YNQVDYKAAV SEFLSKAASV YSQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.30103
Match:	1a8sA
Description:	CHLOROPEROXIDASE F/PROPIONATE COMPLEX
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [274-403]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KTRSLDREAM KGTCHDEITE PIQSLGQSTS GLNRSFNGTP LVTTDHFFVP STVGYYVGRD  60
   61 GGYVQDEHKQ DLICLSNTQT NESVKPNGVL GQILFDVYIP KNVEDWDIKL SETGRSRRRP 120
  121 GKRFIRRSRL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.487	d.51.1	Eukaryotic type KH-domain (KH-domain type I)
View	Download	0.227	f.1.4	Bcl-2 inhibitors of programmed cell death
View	Download	0.227	f.1.4	Bcl-2 inhibitors of programmed cell death
View	Download	0.208	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.208	a.4.5	"Winged helix" DNA-binding domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits